X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FNewickFile.java;h=765ea9520a9a1295bc40756aab07497593dfbd59;hb=c98ec7d017c2f11909f8344fe5d44d97c7c6fc24;hp=93bd27d5d12570a0675eda4e6d1dac14c1583d05;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/src/jalview/io/NewickFile.java b/src/jalview/io/NewickFile.java
index 93bd27d..765ea95 100755
--- a/src/jalview/io/NewickFile.java
+++ b/src/jalview/io/NewickFile.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -110,7 +110,7 @@ public class NewickFile extends FileParse
    */
   public NewickFile(String inStr) throws IOException
   {
-    super(inStr, "Paste");
+    super(inStr, DataSourceType.PASTE);
   }
 
   /**
@@ -118,15 +118,16 @@ public class NewickFile extends FileParse
    * 
    * @param inFile
    *          DOCUMENT ME!
-   * @param type
+   * @param protocol
    *          DOCUMENT ME!
    * 
    * @throws IOException
    *           DOCUMENT ME!
    */
-  public NewickFile(String inFile, String type) throws IOException
+  public NewickFile(String inFile, DataSourceType protocol)
+          throws IOException
   {
-    super(inFile, type);
+    super(inFile, protocol);
   }
 
   public NewickFile(FileParse source) throws IOException
@@ -966,7 +967,7 @@ public class NewickFile extends FileParse
       treefile.close();
       System.out.println("Read file :\n");
 
-      NewickFile trf = new NewickFile(args[0], "File");
+      NewickFile trf = new NewickFile(args[0], DataSourceType.FILE);
       trf.parse();
       System.out.println("Original file :\n");