X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FNewickFile.java;h=ab3c37c6fd010bb53b054cc4bbf2d7f3dd02787d;hb=3e29fb36af9c48e07837e32b7e99c081b2461b2f;hp=92456d5aaccb7a96c5d6c39b52a8f52c3e161a4e;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/io/NewickFile.java b/src/jalview/io/NewickFile.java index 92456d5..ab3c37c 100755 --- a/src/jalview/io/NewickFile.java +++ b/src/jalview/io/NewickFile.java @@ -26,12 +26,15 @@ // TODO: Extended SequenceNodeI to hold parsed NHX strings package jalview.io; -import java.io.*; -import java.util.StringTokenizer; - -import jalview.datamodel.*; +import jalview.datamodel.SequenceNode; import jalview.util.MessageManager; +import java.io.BufferedReader; +import java.io.File; +import java.io.FileReader; +import java.io.IOException; +import java.util.StringTokenizer; + /** * Parse a new hanpshire style tree Caveats: NHX files are NOT supported and the * tree distances and topology are unreliable when they are parsed. TODO: on @@ -612,11 +615,14 @@ public class NewickFile extends FileParse if (Error != null) { - throw (new IOException(MessageManager.formatMessage("exception.newfile", new String[]{Error.toString()}))); + throw (new IOException(MessageManager.formatMessage( + "exception.newfile", new String[] { Error.toString() }))); } if (root == null) { - throw (new IOException(MessageManager.formatMessage("exception.newfile", new String[]{MessageManager.getString("label.no_tree_read_in")}))); + throw (new IOException(MessageManager.formatMessage( + "exception.newfile", new String[] { MessageManager + .getString("label.no_tree_read_in") }))); } // THe next line is failing for topali trees - not sure why yet. if // (root.right()!=null && root.isDummy())