X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FPIRFile.java;h=8b05171260cae8cf2b368a137ac69c999133e10b;hb=68a0d4900885cec55096d1f266ee15ef6217f754;hp=b958456265cb655472c75d783329a3ab2a07887f;hpb=38299bef6dfd4b713f615781e631dcb66e1155f2;p=jalview.git

diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java
index b958456..8b05171 100755
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -34,11 +34,6 @@ public class PIRFile
   {
   }
 
-  public PIRFile(String inStr)
-  {
-    super(inStr);
-  }
-
   public PIRFile(String inFile, String type)
       throws IOException
   {
@@ -119,7 +114,7 @@ public class PIRFile
 
     while ( (i < s.length) && (s[i] != null))
     {
-      String seq = s[i].getSequence();
+      String seq = s[i].getSequenceAsString();
       seq = seq + "*";