X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FPfamFile.java;h=667da9fccd72ebc7f3fb3bc8a2bc531676806397;hb=b5f2dfda36c463b93f34db95fe5bc5ff2a1516bf;hp=71cc7f04a200e542f82578addb08a7a93d598f15;hpb=abad83613306b9afe956746610e3d62b47c4c0fd;p=jalview.git

diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java
index 71cc7f0..667da9f 100755
--- a/src/jalview/io/PfamFile.java
+++ b/src/jalview/io/PfamFile.java
@@ -108,7 +108,7 @@ public class PfamFile extends AlignFile
       }
       if (spces + 1 < line.length())
       {
-        tempseq.append(line.substring(spces + 1));
+        tempseq.append(line.substring(spces + 1).trim());
       }
     }