X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FPfamFile.java;h=8056f383763dd8e557d0084b244ebc211b947edf;hb=4f24ef0848cf3c43ba0467f31fce1baa5c57aad5;hp=ec52bace0cbccfe55adc613272303e32d428642b;hpb=55e2e9b22b133db8b9ff0979b0338a33081fc8fd;p=jalview.git

diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java
index ec52bac..8056f38 100755
--- a/src/jalview/io/PfamFile.java
+++ b/src/jalview/io/PfamFile.java
@@ -48,8 +48,7 @@ public class PfamFile
     super.initData();
   }
 
-  public void parse()
-      throws IOException
+  public void parse() throws IOException
   {
     int i = 0;
     String line;
@@ -118,8 +117,9 @@ public class PfamFile
 
         if (!isValidProteinSequence(newSeq.getSequence()))
         {
-          throw new IOException(
-              "Not a valid protein sequence - (PFAM input)");
+          throw new IOException(AppletFormatAdapter.INVALID_CHARACTERS
+                                +" : "+ newSeq.getName()
+                                +" : "+invalidCharacter);
         }
       }
       else