X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FScoreMatrixFile.java;h=d28c511811bb83b48e1ab6e01ea68f53ae18f6a8;hb=e4496f5b27c5a01a1cc494653bd3f9f49080d544;hp=3a7ff4fc6d795e48efaaf811ce5bdba99bd10d46;hpb=dfc0108321583d7a9b88357b079316397d3a107f;p=jalview.git

diff --git a/src/jalview/io/ScoreMatrixFile.java b/src/jalview/io/ScoreMatrixFile.java
index 3a7ff4f..d28c511 100644
--- a/src/jalview/io/ScoreMatrixFile.java
+++ b/src/jalview/io/ScoreMatrixFile.java
@@ -53,14 +53,28 @@ public class ScoreMatrixFile extends AlignFile implements
   boolean hasGuideColumn;
 
   /**
-   * Constructor
+   * Constructor given a file reader. The file is parsed immediately and if
+   * successful, the score model registered with the ScoreModels singleton.
    * 
    * @param source
    * @throws IOException
    */
   public ScoreMatrixFile(FileParse source) throws IOException
   {
-    super(false, source);
+    super(true, source);
+  }
+
+  /**
+   * Constructor given a file reader. The data is optionally parsed immediately.
+   * 
+   * @param parseImmediately
+   * @param source
+   * @throws IOException
+   */
+  public ScoreMatrixFile(boolean parseImmediately, FileParse source)
+          throws IOException
+  {
+    super(parseImmediately, source);
   }
 
   @Override