X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FSimpleBlastFile.java;h=b59a4b5b0389d415dc8f4a6e55efa5915ab0bb6c;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=cebe47da7b19f1520e5d213624e4ba559c956779;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/io/SimpleBlastFile.java b/src/jalview/io/SimpleBlastFile.java index cebe47d..b59a4b5 100644 --- a/src/jalview/io/SimpleBlastFile.java +++ b/src/jalview/io/SimpleBlastFile.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) - * Copyright (C) $$Year-Rel$$ The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * @@ -20,10 +20,13 @@ */ package jalview.io; -import java.io.*; -import java.util.*; +import jalview.datamodel.Sequence; +import jalview.datamodel.SequenceI; -import jalview.datamodel.*; +import java.io.IOException; +import java.util.Enumeration; +import java.util.Hashtable; +import java.util.Vector; /** * parse a simple blast report. Attempt to cope with query anchored and pairwise @@ -197,9 +200,8 @@ public class SimpleBlastFile extends AlignFile if (seqentry == null) { padseq = true; // prepend gaps to new sequences in this block - seqentry = new Object[] - { new StringBuffer(), new long[] - { rstart, rend } }; + seqentry = new Object[] { new StringBuffer(), + new long[] { rstart, rend } }; seqentries.addElement(seqentry); seqhash.put(sqid, seqentry);