X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FSimpleBlastFile.java;h=f4dc5a2a89a3383384d452a21b9e63b05a464f66;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=cebe47da7b19f1520e5d213624e4ba559c956779;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/io/SimpleBlastFile.java b/src/jalview/io/SimpleBlastFile.java index cebe47d..f4dc5a2 100644 --- a/src/jalview/io/SimpleBlastFile.java +++ b/src/jalview/io/SimpleBlastFile.java @@ -20,10 +20,13 @@ */ package jalview.io; -import java.io.*; -import java.util.*; +import jalview.datamodel.Sequence; +import jalview.datamodel.SequenceI; -import jalview.datamodel.*; +import java.io.IOException; +import java.util.Enumeration; +import java.util.Hashtable; +import java.util.Vector; /** * parse a simple blast report. Attempt to cope with query anchored and pairwise @@ -197,9 +200,8 @@ public class SimpleBlastFile extends AlignFile if (seqentry == null) { padseq = true; // prepend gaps to new sequences in this block - seqentry = new Object[] - { new StringBuffer(), new long[] - { rstart, rend } }; + seqentry = new Object[] { new StringBuffer(), + new long[] { rstart, rend } }; seqentries.addElement(seqentry); seqhash.put(sqid, seqentry);