X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FStructureFile.java;h=f498c1ee5c13b5915cabec4a1e56a8a7da55e466;hb=7fe4dbd0f30dd29c51daaf291d3710af7b1c88b9;hp=0a0504e55b4652554c7822dc8a433a5e8786c9aa;hpb=9c05fc8a07869007db06cc7efc54f2ac41e4575c;p=jalview.git

diff --git a/src/jalview/io/StructureFile.java b/src/jalview/io/StructureFile.java
index 0a0504e..f498c1e 100644
--- a/src/jalview/io/StructureFile.java
+++ b/src/jalview/io/StructureFile.java
@@ -70,6 +70,25 @@ public abstract class StructureFile extends AlignFile
 
   private StructureImportSettings.TFType temperatureFactorType = TFType.DEFAULT;
 
+  private String paeMatrix = null;
+
+  private boolean alphaFoldModel;
+
+  public void setPAEMatrix(String paeFilename)
+  {
+    paeMatrix = paeFilename;
+  }
+
+  public String getPAEMatrix()
+  {
+    return paeMatrix;
+  }
+
+  public boolean hasPAEMatrix()
+  {
+    return paeMatrix != null;
+  }
+
   public void setTemperatureFactorType(StructureImportSettings.TFType t)
   {
     this.temperatureFactorType = t;
@@ -80,6 +99,16 @@ public abstract class StructureFile extends AlignFile
     return temperatureFactorType;
   }
 
+  public void setAlphafoldModel(boolean afm)
+  {
+    alphaFoldModel = afm;
+  }
+
+  public boolean isAlphafoldModel()
+  {
+    return alphaFoldModel;
+  }
+
   public StructureFile(Object inFile, DataSourceType sourceType)
           throws IOException
   {