X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FTCoffeeScoreFile.java;h=158ba6b2ae61565db40697f99c9491b38635a5c5;hb=2bd43f464e725844b02a106c2d2f187c2c3655a6;hp=9776b56cab0044c0a9afcf5ba6f4f851f7e916f4;hpb=e54608848d1b11338d6ef287385ad818606bff16;p=jalview.git diff --git a/src/jalview/io/TCoffeeScoreFile.java b/src/jalview/io/TCoffeeScoreFile.java index 9776b56..158ba6b 100644 --- a/src/jalview/io/TCoffeeScoreFile.java +++ b/src/jalview/io/TCoffeeScoreFile.java @@ -33,15 +33,6 @@ import java.util.Map; import java.util.regex.Matcher; import java.util.regex.Pattern; -import javax.xml.parsers.ParserConfigurationException; - -import org.xml.sax.SAXException; - -import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax; -import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed; -import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied; -import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses; - /** * A file parse for T-Coffee score ascii format. This file contains the * alignment consensus for each resude in any sequence. @@ -97,13 +88,13 @@ import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses; */ public class TCoffeeScoreFile extends AlignFile { - public TCoffeeScoreFile(String inFile, String type) throws Exception + public TCoffeeScoreFile(String inFile, String type) throws IOException { super(inFile, type); } - public TCoffeeScoreFile(FileParse source) throws Exception + public TCoffeeScoreFile(FileParse source) throws IOException { super(source); }