X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FTCoffeeScoreFile.java;h=4f94be9a41bf2f015966af0e77aea41a721dad19;hb=67b3acb8df1438ef37a756c04e14f5a3b8406808;hp=ca8a22ab7e9c1867ffd7157319142d3910be892d;hpb=aa91e8c4561c2dd0f18760e18fb0052979733bf8;p=jalview.git

diff --git a/src/jalview/io/TCoffeeScoreFile.java b/src/jalview/io/TCoffeeScoreFile.java
index ca8a22a..4f94be9 100644
--- a/src/jalview/io/TCoffeeScoreFile.java
+++ b/src/jalview/io/TCoffeeScoreFile.java
@@ -25,6 +25,7 @@ import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
+import jalview.util.Comparison;
 
 import java.awt.Color;
 import java.io.IOException;
@@ -592,7 +593,7 @@ public class TCoffeeScoreFile extends AlignFile
       for (int j = 0; j < jSize; j++)
       {
         byte val = srow[j];
-        if (s != null && jalview.util.Comparison.isGap(s.getCharAt(j)))
+        if (s != null && Comparison.isGap(s.getCharAt(j)))
         {
           annotations[j] = null;
           if (val > 0)