X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FTCoffeeScoreFile.java;h=c3ec9514f77a99b68700071947b5d6be16d236ca;hb=500bc57b2d6901ff09f6b1511289f85ba9dec823;hp=97de459be5f199ea3e3dceeafa71bc93d5b5f9ac;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git

diff --git a/src/jalview/io/TCoffeeScoreFile.java b/src/jalview/io/TCoffeeScoreFile.java
index 97de459..c3ec951 100644
--- a/src/jalview/io/TCoffeeScoreFile.java
+++ b/src/jalview/io/TCoffeeScoreFile.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -91,9 +91,10 @@ import java.util.regex.Pattern;
  */
 public class TCoffeeScoreFile extends AlignFile
 {
-  public TCoffeeScoreFile(String inFile, String type) throws IOException
+  public TCoffeeScoreFile(String inFile, DataSourceType fileSourceType)
+          throws IOException
   {
-    super(inFile, type);
+    super(inFile, fileSourceType);
 
   }
 
@@ -213,6 +214,7 @@ public class TCoffeeScoreFile extends AlignFile
     return result;
   }
 
+  @Override
   public void parse() throws IOException
   {
     /*
@@ -643,7 +645,7 @@ public class TCoffeeScoreFile extends AlignFile
   }
 
   @Override
-  public String print()
+  public String print(SequenceI[] sqs, boolean jvsuffix)
   {
     // TODO Auto-generated method stub
     return "Not valid.";