X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FVamsasAppDatastore.java;h=84d31f03e47bcf39e29e3e7a22732002b11cde70;hb=72fb6df14f1ff426bbafa18dcc9a90450da93018;hp=3145fe996a84f3600bc6a579a7014b80ad3352c2;hpb=53b2ec17b88081e402f60deab2723750bc4867d1;p=jalview.git

diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java
index 3145fe9..84d31f0 100644
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -21,7 +21,6 @@
 package jalview.io;
 
 import jalview.bin.Cache;
-import jalview.bin.Instance;
 import jalview.datamodel.AlignedCodonFrame;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.GraphLine;
@@ -390,7 +389,6 @@ public class VamsasAppDatastore
         {
           dssmods.addElement(sequence);
         }
-        ;
       }
       if (dssmods.size() > 0)
       {
@@ -586,7 +584,6 @@ public class VamsasAppDatastore
                           (AlignmentSequence) alsref, aa[i]);
                   break;
                 }
-                ;
               }
             }
           }
@@ -723,7 +720,7 @@ public class VamsasAppDatastore
       // FIND ANY ASSOCIATED TREES
       if (Desktop.getDesktopPane() != null)
       {
-        javax.swing.JInternalFrame[] frames = Instance.getDesktop()
+        javax.swing.JInternalFrame[] frames = Desktop.getInstance()
                 .getAllFrames();
 
         for (int t = 0; t < frames.length; t++)
@@ -1479,8 +1476,7 @@ public class VamsasAppDatastore
           // active
           if (mappings != null)
           {
-            jalview.structure.StructureSelectionManager
-                    .getStructureSelectionManager(Instance.getDesktop())
+            Desktop.getStructureSelectionManager()
                     .registerMappings(mappings);
           }
         }