X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FVamsasAppDatastore.java;h=ac00b33f60929ab0f3a2551e6f78723b961e60f3;hb=2ac096ecd8ee1a5c11480e864fce7cf78d661c66;hp=e3134701f2cdea655cc9417bc054c81a6cabaf30;hpb=eb53458ceff17b79d613ec208b5185f541eb6320;p=jalview.git

diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java
index e313470..ac00b33 100644
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -717,7 +717,7 @@ public class VamsasAppDatastore
 
   /**
    * very quick test to see if the viewport would be stored in the vamsas document.
-   * Reasons for not storing include the unaligned flag being false.
+   * Reasons for not storing include the unaligned flag being false (for all sequences, including the hidden ones!)
    * @param av
    * @return true if alignment associated with this view will be stored in document.
    */