X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FWSWUBlastClient.java;h=55e72ebbb2afe3be7def0613f8b4ecbde97f2288;hb=fee1b781ca14aadea5d112fc554fe14879c787c5;hp=d94d0214f98054584a6bbc6061fbda8cfcc1c179;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java
index d94d021..55e72eb 100755
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -27,6 +27,7 @@ import jalview.datamodel.Sequence;
 import jalview.gui.AlignmentPanel;
 import jalview.gui.CutAndPasteTransfer;
 import jalview.gui.Desktop;
+import jalview.gui.JvOptionPane;
 import jalview.util.MessageManager;
 
 import java.util.ArrayList;
@@ -35,7 +36,6 @@ import java.util.StringTokenizer;
 import java.util.Vector;
 
 import javax.swing.ImageIcon;
-import javax.swing.JOptionPane;
 
 import uk.ac.ebi.www.Data;
 import uk.ac.ebi.www.InputParams;
@@ -150,11 +150,11 @@ public class WSWUBlastClient
   {
     // This must be outside the run() body as java 1.5
     // will not return any value from the OptionPane to the expired thread.
-    int reply = JOptionPane.showConfirmDialog(Desktop.desktop,
+    int reply = JvOptionPane.showConfirmDialog(Desktop.desktop,
             "Automatically update suggested ids?",
-            "Auto replace sequence ids", JOptionPane.YES_NO_OPTION);
+            "Auto replace sequence ids", JvOptionPane.YES_NO_OPTION);
 
-    if (reply == JOptionPane.YES_OPTION)
+    if (reply == JvOptionPane.YES_OPTION)
     {
       Enumeration keys = suggestedIds.elements();
       while (keys.hasMoreElements())
@@ -176,7 +176,7 @@ public class WSWUBlastClient
           }
         }
 
-        DBRefEntry[] entries = oldseq.getDBRef();
+        DBRefEntry[] entries = oldseq.getDBRefs();
         if (entries != null)
         {
           oldseq.addDBRef(new jalview.datamodel.DBRefEntry(
@@ -211,6 +211,7 @@ public class WSWUBlastClient
       }
     }
 
+    @Override
     public void run()
     {
       while (jobsRunning > 0)
@@ -250,6 +251,7 @@ public class WSWUBlastClient
       this.sequence = sequence;
     }
 
+    @Override
     public void run()
     {
       StartJob();