X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FWSWUBlastClient.java;h=99beb5f1946a534abe5391361300a54e6f37b86f;hb=72c7616e58df4e815723479de96b062ccd956c9e;hp=8e4532c836e0337318d85435c0ecba49a174a2cf;hpb=75cbd01f57e64f0b2946e8b54005dadf139546ee;p=jalview.git

diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java
index 8e4532c..99beb5f 100755
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -64,6 +64,7 @@ public class WSWUBlastClient
         for (int i = 0; i < ids.size(); i++)
         {
             SequenceI sequence = al.findName(ids.get(i).toString());
+            System.out.println(ids.get(i).toString());
             StringBuffer nonGapped = new StringBuffer();
 
 
@@ -126,7 +127,10 @@ public class WSWUBlastClient
                         {
                             maxFound = value;
                             buffer.append(" " + id2 + " " + value + "%; ");
-                            suggestedIds.put(id1, id2);
+                            if(!suggestedIds.containsKey(id1))
+                             {
+                               suggestedIds.put(id1, id2);
+                             }
                         }
                     }
                 }
@@ -138,6 +142,8 @@ public class WSWUBlastClient
 
     void updateIds()
     {
+        // This must be outside the run() body as java 1.5
+     // will not return any value from the OptionPane to the expired thread.
       int reply = JOptionPane.showConfirmDialog(
           Desktop.desktop, "Automatically update suggested ids?",
           "Auto replace sequence ids", JOptionPane.YES_NO_OPTION);