X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FWSWUBlastClient.java;h=df15b5e5a7abb42bc1ea4f2859a41ce64d893171;hb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;hp=4046c42f40ffe81de79cee07b7bffb5de96d74f6;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java index 4046c42..df15b5e 100755 --- a/src/jalview/io/WSWUBlastClient.java +++ b/src/jalview/io/WSWUBlastClient.java @@ -1,19 +1,20 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; @@ -24,6 +25,7 @@ import javax.swing.*; import jalview.analysis.*; import jalview.datamodel.*; import jalview.gui.*; +import jalview.util.MessageManager; import uk.ac.ebi.www.*; /** @@ -56,16 +58,10 @@ public class WSWUBlastClient { this.ap = ap; this.al = al; - output - .setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered." - + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below." - + "\n\nRunning WSWUBlast at EBI." - + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R." - + "\nSOAP-based services provided by the European Bioinformatics Institute." - + "\nNucleic Acids Res. 33(1):W25-W28 (2005));"); + output.setText(MessageManager.getString("label.wswublast_client_credits")); Desktop.addInternalFrame(output, - "BLASTing for unidentified sequences ", 800, 300); + MessageManager.getString("label.blasting_for_unidentified_sequence"), 800, 300); for (int i = 0; i < ids.size(); i++) { @@ -286,8 +282,8 @@ public class WSWUBlastClient Data inputs[] = new Data[1]; Data input = new Data(); input.setType("sequence"); - input.setContent(AlignSeq.extractGaps("-. ", sequence - .getSequenceAsString())); + input.setContent(AlignSeq.extractGaps("-. ", + sequence.getSequenceAsString())); inputs[0] = input; WSWUBlastService service = new WSWUBlastServiceLocator();