X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FWSWUBlastClient.java;h=e24c2f3540d73bb57fe1420b98fe060587d0eff4;hb=c49683bef626d9c1de9d06e5f11039e6d4df55c3;hp=d526a3135a43edcae5849ac4dfc04d10fbac9112;hpb=106a3890f956e2aa7780b2985f4326655912a558;p=jalview.git

diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java
index d526a31..e24c2f3 100755
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -32,6 +32,7 @@ import jalview.util.MessageManager;
 
 import java.util.ArrayList;
 import java.util.Enumeration;
+import java.util.List;
 import java.util.StringTokenizer;
 import java.util.Vector;
 
@@ -149,7 +150,7 @@ public class WSWUBlastClient
   {
     // This must be outside the run() body as java 1.5
     // will not return any value from the OptionPane to the expired thread.
-    int reply = JvOptionPane.showConfirmDialog(Desktop.desktop,
+    int reply = JvOptionPane.showConfirmDialog(Desktop.getDesktopPane(),
             "Automatically update suggested ids?",
             "Auto replace sequence ids", JvOptionPane.YES_NO_OPTION);
 
@@ -175,12 +176,13 @@ public class WSWUBlastClient
           }
         }
 
-        DBRefEntry[] entries = oldseq.getDBRefs();
-        if (entries != null)
+        List<DBRefEntry> entries = oldseq.getDBRefs();
+        // BH 2019.01.25 check for 0-length was missing here
+        if (entries != null && entries.size() > 0)
         {
           oldseq.addDBRef(new jalview.datamodel.DBRefEntry(
                   jalview.datamodel.DBRefSource.UNIPROT, "0",
-                  entries[0].getAccessionId()));
+                  entries.get(0).getAccessionId()));
         }
       }
     }