X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FWSWUBlastClient.java;h=f4569dc3d6439655336be72db6cb325e9c5fa3ed;hb=2026a420963f094072607c0495b6369ba96e60c0;hp=4046c42f40ffe81de79cee07b7bffb5de96d74f6;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java index 4046c42..f4569dc 100755 --- a/src/jalview/io/WSWUBlastClient.java +++ b/src/jalview/io/WSWUBlastClient.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -56,13 +56,12 @@ public class WSWUBlastClient { this.ap = ap; this.al = al; - output - .setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered." - + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below." - + "\n\nRunning WSWUBlast at EBI." - + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R." - + "\nSOAP-based services provided by the European Bioinformatics Institute." - + "\nNucleic Acids Res. 33(1):W25-W28 (2005));"); + output.setText("To display sequence features an exact Uniprot id with 100% sequence identity match must be entered." + + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below." + + "\n\nRunning WSWUBlast at EBI." + + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R." + + "\nSOAP-based services provided by the European Bioinformatics Institute." + + "\nNucleic Acids Res. 33(1):W25-W28 (2005));"); Desktop.addInternalFrame(output, "BLASTing for unidentified sequences ", 800, 300); @@ -286,8 +285,8 @@ public class WSWUBlastClient Data inputs[] = new Data[1]; Data input = new Data(); input.setType("sequence"); - input.setContent(AlignSeq.extractGaps("-. ", sequence - .getSequenceAsString())); + input.setContent(AlignSeq.extractGaps("-. ", + sequence.getSequenceAsString())); inputs[0] = input; WSWUBlastService service = new WSWUBlastServiceLocator();