X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FGff3Helper.java;fp=src%2Fjalview%2Fio%2Fgff%2FGff3Helper.java;h=ac4e1d834fd9941e331aecf4cb7fffcae010d06a;hb=947109cebef3e98693ffc0a70b5bffcbd32217e2;hp=a25a0141482317eae632b79764ac7996c4c49cc6;hpb=825ef108d5bfcf9b3e3eb9422b27658c80ab0854;p=jalview.git

diff --git a/src/jalview/io/gff/Gff3Helper.java b/src/jalview/io/gff/Gff3Helper.java
index a25a014..ac4e1d8 100644
--- a/src/jalview/io/gff/Gff3Helper.java
+++ b/src/jalview/io/gff/Gff3Helper.java
@@ -216,7 +216,7 @@ public class Gff3Helper extends GffHelperBase
         int fromStart = Integer.parseInt(gffColumns[START_COL]);
         int fromEnd = Integer.parseInt(gffColumns[END_COL]);
         MapList mapping = constructMappingFromAlign(fromStart, fromEnd,
-                toStart, toEnd, MappingType.NucleotideToNucleotide);
+                toStart, toEnd, MappingType.GenomeToCdna);
 
         if (mapping != null)
         {