X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FGff3Helper.java;h=031900d3c199d75b4f70e29b43abb07049ff7965;hb=9e5253dce9d7547e3191d596ed10f73e4af0cc1d;hp=bd34d3c2dd09dd1a3322ea737ea19efe3707dae9;hpb=ca5d8d9fcaa5ad7b7e495112e796ef1c109baabe;p=jalview.git

diff --git a/src/jalview/io/gff/Gff3Helper.java b/src/jalview/io/gff/Gff3Helper.java
index bd34d3c..031900d 100644
--- a/src/jalview/io/gff/Gff3Helper.java
+++ b/src/jalview/io/gff/Gff3Helper.java
@@ -5,7 +5,6 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.MappingType;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
-import jalview.ext.ensembl.EnsemblSeqProxy;
 import jalview.util.MapList;
 import jalview.util.StringUtils;
 
@@ -388,8 +387,9 @@ public class Gff3Helper extends GffHelperBase
      * extract 'Name' for a transcript (to show gene name)
      * or an exon (so 'colour by label' shows exon boundaries) 
      */
-    if (EnsemblSeqProxy.isTranscript(type)
-            || so.isA(type, SequenceOntology.EXON))
+    if (SequenceOntologyI.NMD_TRANSCRIPT_VARIANT.equals(type)
+            || so.isA(type, SequenceOntologyI.TRANSCRIPT)
+            || so.isA(type, SequenceOntologyI.EXON))
     {
       desc = StringUtils.listToDelimitedString(attributes.get("Name"), ",");
     }