X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FGff3Helper.java;h=031900d3c199d75b4f70e29b43abb07049ff7965;hb=e5759b04c4487a7ac09a0231a8e9f958ce38e93a;hp=d29645be9f1a5973b68f8de60de63dc7f0788299;hpb=3cccac4697c371b1964236e17b532fd3d180e1c4;p=jalview.git

diff --git a/src/jalview/io/gff/Gff3Helper.java b/src/jalview/io/gff/Gff3Helper.java
index d29645b..031900d 100644
--- a/src/jalview/io/gff/Gff3Helper.java
+++ b/src/jalview/io/gff/Gff3Helper.java
@@ -5,7 +5,6 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.MappingType;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
-import jalview.ext.ensembl.EnsemblSeqProxy;
 import jalview.util.MapList;
 import jalview.util.StringUtils;
 
@@ -388,11 +387,21 @@ public class Gff3Helper extends GffHelperBase
      * extract 'Name' for a transcript (to show gene name)
      * or an exon (so 'colour by label' shows exon boundaries) 
      */
-    if (EnsemblSeqProxy.isTranscript(type)
-            || so.isA(type, SequenceOntology.EXON))
+    if (SequenceOntologyI.NMD_TRANSCRIPT_VARIANT.equals(type)
+            || so.isA(type, SequenceOntologyI.TRANSCRIPT)
+            || so.isA(type, SequenceOntologyI.EXON))
     {
       desc = StringUtils.listToDelimitedString(attributes.get("Name"), ",");
     }
+
+    /*
+     * if the above fails, try ID
+     */
+    if (desc == null)
+    {
+      desc = (String) sf.getValue(ID);
+    }
+
     return desc;
   }
 }