X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FInterProScanHelper.java;h=141b6770c899ed9560fc34a813a071c359e02063;hb=2ea1fb1e8751ac7272c421820000449525664f02;hp=0aa3b74cb2376333ff75f8094f6c5ad91b1c7c34;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git

diff --git a/src/jalview/io/gff/InterProScanHelper.java b/src/jalview/io/gff/InterProScanHelper.java
index 0aa3b74..141b677 100644
--- a/src/jalview/io/gff/InterProScanHelper.java
+++ b/src/jalview/io/gff/InterProScanHelper.java
@@ -108,11 +108,11 @@ public class InterProScanHelper extends Gff3Helper
    */
   public static boolean recognises(String[] columns)
   {
-    SequenceOntologyI so = SequenceOntologyFactory.getInstance();
+    SequenceOntologyI so = SequenceOntologyFactory.getSequenceOntology();
     String type = columns[TYPE_COL];
     if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH)
-            || (".".equals(columns[SOURCE_COL]) && so.isA(type,
-                    SequenceOntologyI.POLYPEPTIDE)))
+            || (".".equals(columns[SOURCE_COL])
+                    && so.isA(type, SequenceOntologyI.POLYPEPTIDE)))
     {
       return true;
     }
@@ -124,7 +124,8 @@ public class InterProScanHelper extends Gff3Helper
    * GFF field 'ID' rather than the usual 'Target' :-O
    */
   @Override
-  protected String findTargetId(String target, Map<String, List<String>> set)
+  protected String findTargetId(String target,
+          Map<String, List<String>> set)
   {
     List<String> ids = set.get(ID);
     if (ids == null || ids.size() != 1)