X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FSequenceOntologyLite.java;fp=src%2Fjalview%2Fio%2Fgff%2FSequenceOntologyLite.java;h=6719ae6e749235eeaa4fe6d0a91d077108bb84e3;hb=b96accb6a3904ea9b424f1dbd8b2b3b4164c521b;hp=173dea6324e5003e3c89e79f7e0d66b735ab831d;hpb=07f0cb34d94a87585e56f0128af5201699c1b1b4;p=jalview.git

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index 173dea6..6719ae6 100644
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -58,7 +58,18 @@ public class SequenceOntologyLite implements SequenceOntologyI
      * no sub-types of exon or CDS yet encountered; add if needed
      */
     { "exon", "exon" },
-    { "CDS", "CDS" }
+    { "CDS", "CDS" },
+    
+    /*
+     * used in exonerate GFF
+     */
+    { "protein_match", "protein_match"},
+    { "nucleotide_match", "nucleotide_match"},
+    
+    /*
+     * used in InterProScan GFF
+     */
+    { "polypeptide", "polypeptide" }
   };
   // @formatter:on