X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FSequenceOntologyLite.java;h=c0ae971043d2e11afe0e02c75ca596c0020e616e;hb=e96f5e8ce137e879dd4b4f37fb5c4d134e2778e2;hp=6719ae6e749235eeaa4fe6d0a91d077108bb84e3;hpb=3e3c9f8a78a2f8378b01b68900d9efb4ab95c7e6;p=jalview.git

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index 6719ae6..c0ae971 100644
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -55,10 +55,13 @@ public class SequenceOntologyLite implements SequenceOntologyI
     { "structural_variant", "sequence_variant" },
     
     /*
-     * no sub-types of exon or CDS yet encountered; add if needed
+     * no sub-types of exon or CDS encountered in Ensembl
+     * a few added here for testing purposes
      */
     { "exon", "exon" },
+    { "coding_exon", "exon" },
     { "CDS", "CDS" },
+    { "CDS_predicted", "CDS" },
     
     /*
      * used in exonerate GFF