X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fpacked%2FJalviewDataset.java;h=95de89d6376b81e526ab6b6d34a67adf94028f16;hb=9c00e25bfdf274009a471eba895f39e2fac4c0ac;hp=1972189fc31354c717790bc2a5518e3455186a8c;hpb=332327b9f2272674f8da954d76805ff3754b8ab3;p=jalview.git
diff --git a/src/jalview/io/packed/JalviewDataset.java b/src/jalview/io/packed/JalviewDataset.java
index 1972189..95de89d 100644
--- a/src/jalview/io/packed/JalviewDataset.java
+++ b/src/jalview/io/packed/JalviewDataset.java
@@ -1,3 +1,20 @@
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ *******************************************************************************/
package jalview.io.packed;
import jalview.datamodel.AlignmentI;
@@ -69,8 +86,8 @@ public class JalviewDataset
*/
List al;
public class AlignmentSet {
- AlignmentI al;
- List trees;
+ public AlignmentI al;
+ public List trees;
AlignmentSet(AlignmentI a) {
al = a;
trees = new ArrayList();
@@ -148,6 +165,8 @@ public class JalviewDataset
*/
Hashtable seqDetails;
+ public boolean relaxedIdMatching=false;
+
public JalviewDataset()
{
seqDetails = new Hashtable();