X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fpacked%2FJalviewDataset.java;h=9f84c16235cf5d79116a61501dc6c2e3c50406aa;hb=66270dda280788c15956c7a0485f0b9adf03c62a;hp=c79c63ab549e471f8a53db20efcef73bf074c475;hpb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;p=jalview.git diff --git a/src/jalview/io/packed/JalviewDataset.java b/src/jalview/io/packed/JalviewDataset.java index c79c63a..9f84c16 100644 --- a/src/jalview/io/packed/JalviewDataset.java +++ b/src/jalview/io/packed/JalviewDataset.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,6 +20,7 @@ */ package jalview.io.packed; +import jalview.analysis.TreeModel; import jalview.api.FeatureColourI; import jalview.datamodel.AlignmentI; import jalview.datamodel.SequenceI; @@ -151,8 +152,7 @@ public class JalviewDataset { // the following works because all trees are already had node/SequenceI // associations created. - jalview.analysis.NJTree njt = new jalview.analysis.NJTree( - al.getSequencesArray(), nf); + TreeModel njt = new TreeModel(al.getSequencesArray(), null, nf); // this just updates the displayed leaf name on the tree according to // the SequenceIs. njt.renameAssociatedNodes();