X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fpacked%2FJalviewDataset.java;h=9f84c16235cf5d79116a61501dc6c2e3c50406aa;hb=e67e5f3a5b922e8a7729a0e9e9b174f46b11456c;hp=63263d2064f7125f012b1e53abb55b268ca9b57a;hpb=bf0d052fef43e9809b7170dbfd372b3ea116391b;p=jalview.git

diff --git a/src/jalview/io/packed/JalviewDataset.java b/src/jalview/io/packed/JalviewDataset.java
index 63263d2..9f84c16 100644
--- a/src/jalview/io/packed/JalviewDataset.java
+++ b/src/jalview/io/packed/JalviewDataset.java
@@ -20,6 +20,7 @@
  */
 package jalview.io.packed;
 
+import jalview.analysis.TreeModel;
 import jalview.api.FeatureColourI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
@@ -151,8 +152,7 @@ public class JalviewDataset
       {
         // the following works because all trees are already had node/SequenceI
         // associations created.
-        jalview.analysis.NJTree njt = new jalview.analysis.NJTree(
-                al.getSequencesArray(), nf);
+        TreeModel njt = new TreeModel(al.getSequencesArray(), null, nf);
         // this just updates the displayed leaf name on the tree according to
         // the SequenceIs.
         njt.renameAssociatedNodes();
@@ -211,8 +211,7 @@ public class JalviewDataset
    * @param parentAlignment
    */
   public JalviewDataset(AlignmentI aldataset,
-          Map<String, FeatureColourI> fc,
-          Hashtable seqDets)
+          Map<String, FeatureColourI> fc, Hashtable seqDets)
   {
     // TODO not used - remove?
     this(aldataset, fc, seqDets, null);
@@ -234,8 +233,8 @@ public class JalviewDataset
    *          with.
    */
   public JalviewDataset(AlignmentI aldataset,
-          Map<String, FeatureColourI> fc,
-          Hashtable seqDets, AlignmentI parentAlignment)
+          Map<String, FeatureColourI> fc, Hashtable seqDets,
+          AlignmentI parentAlignment)
   {
     this();
     parentDataset = aldataset;