X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fpacked%2FParsePackedSet.java;h=37dd66b60cb3f0bf83069ab38d84ba7ac35cbdff;hb=refs%2Fheads%2Ffeatures%2Fr2_11_2_alphafold%2FJAL-2349_JAL-3855;hp=16356829a7061513c635c95c9711f665810799e6;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git diff --git a/src/jalview/io/packed/ParsePackedSet.java b/src/jalview/io/packed/ParsePackedSet.java index 1635682..37dd66b 100644 --- a/src/jalview/io/packed/ParsePackedSet.java +++ b/src/jalview/io/packed/ParsePackedSet.java @@ -20,6 +20,8 @@ */ package jalview.io.packed; +import java.util.Locale; + import jalview.api.FeatureColourI; import jalview.datamodel.AlignmentI; import jalview.io.AppletFormatAdapter; @@ -52,7 +54,7 @@ public class ParsePackedSet public Object[] getAlignment(JalviewDataset context, Iterable files) throws Exception { - List rslt = new ArrayList(); + List rslt = new ArrayList<>(); if (context == null) { context = new JalviewDataset(); @@ -151,7 +153,7 @@ public class ParsePackedSet // if not, create one. if (context.featureColours == null) { - context.featureColours = new HashMap(); + context.featureColours = new HashMap<>(); } try { @@ -223,18 +225,19 @@ public class ParsePackedSet * would be created. * * @param args + * @j2sIgnore */ public static void main(String args[]) { // make data providers from the set of keys/files int i = 0; - List dp = new ArrayList(); + List dp = new ArrayList<>(); while ((i + 1) < args.length) { String type = args[i++]; final String file = args[i++]; final JvDataType jtype = DataProvider.JvDataType - .valueOf(type.toUpperCase()); + .valueOf(type.toUpperCase(Locale.ROOT)); if (jtype != null) { final FileParse fp; @@ -253,7 +256,7 @@ public class ParsePackedSet else { System.out.println("Couldn't parse source type token '" - + type.toUpperCase() + "'"); + + type.toUpperCase(Locale.ROOT) + "'"); } } if (i < args.length)