X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FDatasetsequence.java;h=d170513e2c225b6be65e43c274eab4694478141f;hb=67b3acb8df1438ef37a756c04e14f5a3b8406808;hp=9c86557d1f1242e87280f8def13b015e2d15ca6c;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/io/vamsas/Datasetsequence.java b/src/jalview/io/vamsas/Datasetsequence.java
index 9c86557..d170513 100644
--- a/src/jalview/io/vamsas/Datasetsequence.java
+++ b/src/jalview/io/vamsas/Datasetsequence.java
@@ -23,6 +23,7 @@ package jalview.io.vamsas;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.SequenceI;
 import jalview.io.VamsasAppDatastore;
+
 import uk.ac.vamsas.objects.core.DataSet;
 import uk.ac.vamsas.objects.core.DbRef;
 import uk.ac.vamsas.objects.core.Sequence;
@@ -137,9 +138,8 @@ public class Datasetsequence extends DatastoreItem
 
       for (int sf = 0; sf < sfSize; sf++)
       {
-        modified |= new jalview.io.vamsas.Sequencefeature(datastore,
-                (jalview.datamodel.SequenceFeature) sq
-                        .getSequenceFeatures()[sf], dataset,
+        modified |= new Sequencefeature(datastore,
+                sq.getSequenceFeatures()[sf], dataset,
                 (Sequence) vobj).docWasUpdated();
       }
     }
@@ -181,7 +181,7 @@ public class Datasetsequence extends DatastoreItem
       // jalview.datamodel.DBRefEntry dbentry;
       for (int db = 0; db < entries.length; db++)
       {
-        modifiedthedoc |= new jalview.io.vamsas.Dbref(datastore,
+        modifiedthedoc |= new Dbref(datastore,
         // dbentry =
                 entries[db], sq, (Sequence) vobj, dataset).docWasUpdated();
 
@@ -208,7 +208,7 @@ public class Datasetsequence extends DatastoreItem
       // DbRef dbentry;
       for (int db = 0; db < entries.length; db++)
       {
-        modifiedtheseq |= new jalview.io.vamsas.Dbref(datastore,
+        modifiedtheseq |= new Dbref(datastore,
         // dbentry =
                 entries[db], vsq, sq).jvWasUpdated();
       }