X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FDatastoreItem.java;h=0da8ea9b65da06c0904a47e100747cc02af36a2a;hb=ef0377ec8e57164363e74c33d6ede31f85e8ccf7;hp=d37e8454f942f987cf793a2d77a4f3ec00bd5473;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/io/vamsas/DatastoreItem.java b/src/jalview/io/vamsas/DatastoreItem.java
index d37e845..0da8ea9 100644
--- a/src/jalview/io/vamsas/DatastoreItem.java
+++ b/src/jalview/io/vamsas/DatastoreItem.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -18,8 +18,6 @@
 package jalview.io.vamsas;
 
 import jalview.bin.Cache;
-import jalview.datamodel.DBRefEntry;
-import jalview.gui.TreePanel;
 import jalview.io.VamsasAppDatastore;
 
 import java.util.Enumeration;
@@ -27,12 +25,9 @@ import java.util.Hashtable;
 import java.util.IdentityHashMap;
 import java.util.Vector;
 
-import org.apache.commons.logging.Log;
-
 import uk.ac.vamsas.client.IClientDocument;
 import uk.ac.vamsas.client.Vobject;
 import uk.ac.vamsas.client.VorbaId;
-import uk.ac.vamsas.objects.core.DbRef;
 import uk.ac.vamsas.objects.core.Entry;
 import uk.ac.vamsas.objects.core.Provenance;
 import uk.ac.vamsas.objects.core.Seg;
@@ -200,7 +195,7 @@ public abstract class DatastoreItem
     {
       jv2vobj.put(newjvobject, vobject);
       vobj2jv.put(vobject, newjvobject);
-      updateRegistryEntry(newjvobject, (Vobject) vobject);
+      updateRegistryEntry(newjvobject, vobj);
     }
   }
 
@@ -381,8 +376,8 @@ public abstract class DatastoreItem
   {
     datastore = ds;
     dsReg = ds.getDatastoreRegisty();
-    initDatastoreItem(ds.getProvEntry(), ds.getClientDocument(), ds
-            .getVamsasObjectBinding(), ds.getJvObjectBinding());
+    initDatastoreItem(ds.getProvEntry(), ds.getClientDocument(),
+            ds.getVamsasObjectBinding(), ds.getJvObjectBinding());
   }
 
   private void initDatastoreItem(Entry provEntry, IClientDocument cdoc,