X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FDatastoreItem.java;h=0fae890d0d66a3b85fa8191eda4fb3652a3d01fa;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=d7db6a6fcc6b0197433d22064e52e0639d094391;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/io/vamsas/DatastoreItem.java b/src/jalview/io/vamsas/DatastoreItem.java
index d7db6a6..0fae890 100644
--- a/src/jalview/io/vamsas/DatastoreItem.java
+++ b/src/jalview/io/vamsas/DatastoreItem.java
@@ -1,25 +1,24 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.io.vamsas;
 
 import jalview.bin.Cache;
-import jalview.datamodel.DBRefEntry;
-import jalview.gui.TreePanel;
 import jalview.io.VamsasAppDatastore;
 
 import java.util.Enumeration;
@@ -27,12 +26,9 @@ import java.util.Hashtable;
 import java.util.IdentityHashMap;
 import java.util.Vector;
 
-import org.apache.commons.logging.Log;
-
 import uk.ac.vamsas.client.IClientDocument;
 import uk.ac.vamsas.client.Vobject;
 import uk.ac.vamsas.client.VorbaId;
-import uk.ac.vamsas.objects.core.DbRef;
 import uk.ac.vamsas.objects.core.Entry;
 import uk.ac.vamsas.objects.core.Provenance;
 import uk.ac.vamsas.objects.core.Seg;
@@ -200,7 +196,7 @@ public abstract class DatastoreItem
     {
       jv2vobj.put(newjvobject, vobject);
       vobj2jv.put(vobject, newjvobject);
-      updateRegistryEntry(newjvobject, (Vobject) vobject);
+      updateRegistryEntry(newjvobject, vobj);
     }
   }
 
@@ -381,8 +377,8 @@ public abstract class DatastoreItem
   {
     datastore = ds;
     dsReg = ds.getDatastoreRegisty();
-    initDatastoreItem(ds.getProvEntry(), ds.getClientDocument(), ds
-            .getVamsasObjectBinding(), ds.getJvObjectBinding());
+    initDatastoreItem(ds.getProvEntry(), ds.getClientDocument(),
+            ds.getVamsasObjectBinding(), ds.getJvObjectBinding());
   }
 
   private void initDatastoreItem(Entry provEntry, IClientDocument cdoc,