X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FRangetype.java;h=0fed7d7e03559e520f8daeb2deaa32ccbd48d0de;hb=48a66195bf4aee8b2c479d3bbbf4c1fb8b824f5a;hp=ee4fa8306092c72a4db5d85cd237ffdf41531d27;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git diff --git a/src/jalview/io/vamsas/Rangetype.java b/src/jalview/io/vamsas/Rangetype.java index ee4fa83..0fed7d7 100644 --- a/src/jalview/io/vamsas/Rangetype.java +++ b/src/jalview/io/vamsas/Rangetype.java @@ -148,7 +148,7 @@ public abstract class Rangetype extends DatastoreItem int se_end = se[1 - se[2]] + (se[2] == 0 ? 1 : -1); for (int p = se[se[2]]; p != se_end; p += se[2] == 0 ? 1 : -1) { - posList.add(new Integer(p)); + posList.add(Integer.valueOf(p)); } } } @@ -159,7 +159,7 @@ public abstract class Rangetype extends DatastoreItem for (int p = 0, pSize = dseta.getPosCount(); p < pSize; p++) { pos = dseta.getPos(p).getI(); - posList.add(new Integer(pos)); + posList.add(Integer.valueOf(pos)); } } } @@ -193,8 +193,8 @@ public abstract class Rangetype extends DatastoreItem for (int s = 0, sSize = range.getSegCount(); s < sSize; s++) { se = getSegRange(range.getSeg(s), false); - posList.addElement(new Integer(se[0])); - posList.addElement(new Integer(se[1])); + posList.addElement(Integer.valueOf(se[0])); + posList.addElement(Integer.valueOf(se[1])); } } else if (range.getPosCount() > 0) @@ -204,8 +204,8 @@ public abstract class Rangetype extends DatastoreItem for (int p = 0, pSize = range.getPosCount(); p < pSize; p++) { pos = range.getPos(p).getI(); - posList.add(new Integer(pos)); - posList.add(new Integer(pos)); + posList.add(Integer.valueOf(pos)); + posList.add(Integer.valueOf(pos)); } } } @@ -305,8 +305,8 @@ public abstract class Rangetype extends DatastoreItem { if (ml == null) { - throw new Error(MessageManager - .getString("error.implementation_error_maplist_is_null")); + throw new Error( + "Implementation error. MapList is null for initMapType."); } maprange.setLocal(new Local()); maprange.setMapped(new Mapped());