X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FSequencefeature.java;h=0f9a664ddbec99701ce05b68a4aaa4e89f834cc3;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=4eef15282f0d806767f113a33d56dcefae10f770;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git

diff --git a/src/jalview/io/vamsas/Sequencefeature.java b/src/jalview/io/vamsas/Sequencefeature.java
index 4eef152..0f9a664 100644
--- a/src/jalview/io/vamsas/Sequencefeature.java
+++ b/src/jalview/io/vamsas/Sequencefeature.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,6 +20,12 @@
  */
 package jalview.io.vamsas;
 
+import jalview.bin.Cache;
+import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceI;
+import jalview.io.VamsasAppDatastore;
+import jalview.util.UrlLink;
+
 import java.util.Enumeration;
 import java.util.Vector;
 
@@ -31,11 +37,6 @@ import uk.ac.vamsas.objects.core.RangeAnnotation;
 import uk.ac.vamsas.objects.core.Score;
 import uk.ac.vamsas.objects.core.Seg;
 import uk.ac.vamsas.objects.utils.Properties;
-import jalview.bin.Cache;
-import jalview.datamodel.SequenceFeature;
-import jalview.datamodel.SequenceI;
-import jalview.io.VamsasAppDatastore;
-import jalview.util.UrlLink;
 
 /**
  * @author JimP
@@ -199,15 +200,14 @@ public class Sequencefeature extends Rangetype
               .debug("About to destroy complex annotation in vamsas document mapped to sequence feature ("
                       + dsa.getVorbaId() + ")");
     }
-    dsa.setSeg(new Seg[]
-    { vSeg });
+    dsa.setSeg(new Seg[] { vSeg });
     dsa.setDescription(feature.getDescription());
     dsa.setStatus(feature.getStatus());
     if (feature.links != null && feature.links.size() > 0)
     {
       for (int i = 0, iSize = feature.links.size(); i < iSize; i++)
       {
-        String link = (String) feature.links.elementAt(i);
+        String link = feature.links.elementAt(i);
         UrlLink ulink = new UrlLink(link);
         if (ulink.isValid())
         {
@@ -220,11 +220,10 @@ public class Sequencefeature extends Rangetype
       }
     }
     dsa.setGroup(feature.getFeatureGroup());
-    if (feature.getScore() != Float.NaN)
+    if (!Float.isNaN(feature.getScore()))
     {
       Score fscore = new Score();
-      dsa.setScore(new Score[]
-      { fscore });
+      dsa.setScore(new Score[] { fscore });
       fscore.setContent(feature.getScore());
       fscore.setName(feature.getType());
     }