X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;h=b5ada2658d5e4cb0e9892bc28c83748b993f3644;hb=a23cc416cd520ac6dec6052591575b264f5d25bc;hp=1cbc848d3531b5ded0e7222c333d24dd8d6e8759;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java index 1cbc848..b5ada26 100644 --- a/src/jalview/io/vamsas/Tree.java +++ b/src/jalview/io/vamsas/Tree.java @@ -35,10 +35,10 @@ import jalview.datamodel.SeqCigar; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceI; import jalview.datamodel.SequenceNode; -import jalview.gui.AlignViewport; import jalview.gui.TreePanel; import jalview.io.NewickFile; import jalview.io.VamsasAppDatastore; +import jalview.viewmodel.AlignmentViewport; import uk.ac.vamsas.client.Vobject; import uk.ac.vamsas.objects.core.AlignmentSequence; import uk.ac.vamsas.objects.core.Entry; @@ -510,7 +510,7 @@ public class Tree extends DatastoreItem */ public Object[] recoverInputData(Provenance tp) { - AlignViewport javport = null; + AlignmentViewport javport = null; jalview.datamodel.AlignmentI jal = null; jalview.datamodel.CigarArray view = null; for (int pe = 0; pe < tp.getEntryCount(); pe++) @@ -604,7 +604,7 @@ public class Tree extends DatastoreItem return null; } - private AlignViewport getViewport(Vobject v_parent) + private AlignmentViewport getViewport(Vobject v_parent) { if (v_parent instanceof uk.ac.vamsas.objects.core.Alignment) {