X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvcf%2FVCFLoader.java;fp=src%2Fjalview%2Fio%2Fvcf%2FVCFLoader.java;h=d6a530b7956a086a11c8c8d406e65d0f8b088327;hb=121a4b153bdd56b15ff2c528e6b84219affc09d5;hp=13d7ae8d332b05d065dbffe38db808eb89386fe3;hpb=738f79179e4135a7225fc5c36e1ac4118aff0efb;p=jalview.git diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java index 13d7ae8..d6a530b 100644 --- a/src/jalview/io/vcf/VCFLoader.java +++ b/src/jalview/io/vcf/VCFLoader.java @@ -48,6 +48,7 @@ import java.util.HashMap; import java.util.HashSet; import java.util.Iterator; import java.util.List; +import java.util.Locale; import java.util.Map; import java.util.Map.Entry; import java.util.Set; @@ -569,7 +570,7 @@ public class VCFLoader { for (Pattern p : filters) { - if (p.matcher(id.toUpperCase()).matches()) + if (p.matcher(id.toUpperCase(Locale.ROOT)).matches()) { return true; } @@ -663,7 +664,7 @@ public class VCFLoader { try { - patterns.add(Pattern.compile(token.toUpperCase())); + patterns.add(Pattern.compile(token.toUpperCase(Locale.ROOT))); } catch (PatternSyntaxException e) { System.err.println("Invalid pattern ignored: " + token);