X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvcf%2FVCFLoader.java;h=67cf50feac3bcc00981c6483216e9a9fba7b20e3;hb=refs%2Fheads%2Ffeature%2FJAL-2738GeneLocus;hp=de2f18ad7fa812fefb35350307fff2ed6b1ac322;hpb=4073e96c3cb60f28c01cd91ec7f847cafbf01f78;p=jalview.git

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index de2f18a..67cf50f 100644
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -648,7 +648,7 @@ public class VCFLoader
     String species = seqCoords.getSpeciesId();
     String chromosome = seqCoords.getChromosomeId();
     String seqRef = seqCoords.getAssemblyId();
-    MapList map = seqCoords.getMap();
+    MapList map = seqCoords.getMapping();
 
     if (!vcfSpeciesMatchesSequence(vcfAssembly, species))
     {