X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjavascript%2FJalviewLiteJsApi.java;h=b5811aa52d91adc4a2c2e53fc3ea8278fe59491f;hb=7047b076a62df177047ceb16c3611efe020bdd76;hp=16ba8cfd599a3eef9373ff69464a482138eddf2d;hpb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;p=jalview.git
diff --git a/src/jalview/javascript/JalviewLiteJsApi.java b/src/jalview/javascript/JalviewLiteJsApi.java
index 16ba8cf..b5811aa 100644
--- a/src/jalview/javascript/JalviewLiteJsApi.java
+++ b/src/jalview/javascript/JalviewLiteJsApi.java
@@ -1,20 +1,23 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- *******************************************************************************/
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.javascript;
import jalview.appletgui.AlignFrame;
@@ -70,7 +73,8 @@ public interface JalviewLiteJsApi
* @return String list of selected sequence IDs, each terminated by the given
* separator
*/
- public abstract String getSelectedSequencesFrom(AlignFrame alf, String sep);
+ public abstract String getSelectedSequencesFrom(AlignFrame alf,
+ String sep);
/**
*
@@ -117,7 +121,8 @@ public interface JalviewLiteJsApi
* @param sep
* separator between toselect fields
*/
- public abstract void select(String sequenceIds, String columns, String sep);
+ public abstract void select(String sequenceIds, String columns,
+ String sep);
/**
* select regions of the given alignment frame
@@ -172,8 +177,8 @@ public interface JalviewLiteJsApi
* @return selected sequences as flat file or empty string if there was no
* current selection
*/
- public abstract String getSelectedSequencesAsAlignmentFrom(
- AlignFrame alf, String format, String suffix);
+ public abstract String getSelectedSequencesAsAlignmentFrom(AlignFrame alf,
+ String format, String suffix);
/**
* get a separator separated list of sequence IDs reflecting the order of the
@@ -297,7 +302,8 @@ public interface JalviewLiteJsApi
* @param alf
* @param annotation
*/
- public abstract void loadAnnotationFrom(AlignFrame alf, String annotation);
+ public abstract void loadAnnotationFrom(AlignFrame alf,
+ String annotation);
/**
* parse the given string as a jalview feature or GFF annotation file and
@@ -451,7 +457,8 @@ public interface JalviewLiteJsApi
* Jmol (e.g. first one is frame 1, second is frame 2, etc).
* @see jalview.javascript.MouseOverStructureListener
*/
- public abstract void setStructureListener(String listener, String modelSet);
+ public abstract void setStructureListener(String listener,
+ String modelSet);
/**
* remove any callback using the given listener function and associated with
@@ -564,8 +571,8 @@ public interface JalviewLiteJsApi
* @see jalview.appletgui.AlignFrame#setFeatureGroupState(java.lang.String[],
* boolean)
*/
- public abstract void setFeatureGroupStateOn(AlignFrame alf,
- String groups, boolean state);
+ public abstract void setFeatureGroupStateOn(AlignFrame alf, String groups,
+ boolean state);
public abstract void setFeatureGroupState(String groups, boolean state);
@@ -593,4 +600,4 @@ public interface JalviewLiteJsApi
*/
public abstract String getJsMessage(String messageclass, String viewId);
-}
\ No newline at end of file
+}