X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjavascript%2FJalviewLiteJsApi.java;h=b5811aa52d91adc4a2c2e53fc3ea8278fe59491f;hb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;hp=5c4cb307ea49236a11cfe191a13d4c13fb2e6b58;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git

diff --git a/src/jalview/javascript/JalviewLiteJsApi.java b/src/jalview/javascript/JalviewLiteJsApi.java
index 5c4cb30..b5811aa 100644
--- a/src/jalview/javascript/JalviewLiteJsApi.java
+++ b/src/jalview/javascript/JalviewLiteJsApi.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.javascript;
@@ -71,7 +73,8 @@ public interface JalviewLiteJsApi
    * @return String list of selected sequence IDs, each terminated by the given
    *         separator
    */
-  public abstract String getSelectedSequencesFrom(AlignFrame alf, String sep);
+  public abstract String getSelectedSequencesFrom(AlignFrame alf,
+          String sep);
 
   /**
    * 
@@ -118,7 +121,8 @@ public interface JalviewLiteJsApi
    * @param sep
    *          separator between toselect fields
    */
-  public abstract void select(String sequenceIds, String columns, String sep);
+  public abstract void select(String sequenceIds, String columns,
+          String sep);
 
   /**
    * select regions of the given alignment frame
@@ -173,8 +177,8 @@ public interface JalviewLiteJsApi
    * @return selected sequences as flat file or empty string if there was no
    *         current selection
    */
-  public abstract String getSelectedSequencesAsAlignmentFrom(
-          AlignFrame alf, String format, String suffix);
+  public abstract String getSelectedSequencesAsAlignmentFrom(AlignFrame alf,
+          String format, String suffix);
 
   /**
    * get a separator separated list of sequence IDs reflecting the order of the
@@ -298,7 +302,8 @@ public interface JalviewLiteJsApi
    * @param alf
    * @param annotation
    */
-  public abstract void loadAnnotationFrom(AlignFrame alf, String annotation);
+  public abstract void loadAnnotationFrom(AlignFrame alf,
+          String annotation);
 
   /**
    * parse the given string as a jalview feature or GFF annotation file and
@@ -452,7 +457,8 @@ public interface JalviewLiteJsApi
    *          Jmol (e.g. first one is frame 1, second is frame 2, etc).
    * @see jalview.javascript.MouseOverStructureListener
    */
-  public abstract void setStructureListener(String listener, String modelSet);
+  public abstract void setStructureListener(String listener,
+          String modelSet);
 
   /**
    * remove any callback using the given listener function and associated with
@@ -565,8 +571,8 @@ public interface JalviewLiteJsApi
    * @see jalview.appletgui.AlignFrame#setFeatureGroupState(java.lang.String[],
    *      boolean)
    */
-  public abstract void setFeatureGroupStateOn(AlignFrame alf,
-          String groups, boolean state);
+  public abstract void setFeatureGroupStateOn(AlignFrame alf, String groups,
+          boolean state);
 
   public abstract void setFeatureGroupState(String groups, boolean state);