X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjavascript%2FMouseOverListener.java;h=5b6eeb8da3907937e06c5376bdb1e57e66a16864;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=224c6d6cd5777c7ccd9aa27017e2faf5ba33e151;hpb=caf13e6a9dc82023cd8648420201e5ad60ce0393;p=jalview.git

diff --git a/src/jalview/javascript/MouseOverListener.java b/src/jalview/javascript/MouseOverListener.java
index 224c6d6..5b6eeb8 100644
--- a/src/jalview/javascript/MouseOverListener.java
+++ b/src/jalview/javascript/MouseOverListener.java
@@ -1,13 +1,30 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.javascript;
 
-import java.util.Vector;
-
 import jalview.appletgui.AlignFrame;
 import jalview.bin.JalviewLite;
 import jalview.datamodel.SequenceI;
 import jalview.structure.VamsasListener;
 import jalview.structure.VamsasSource;
-import netscape.javascript.JSObject;
 
 public class MouseOverListener extends JSFunctionExec implements
         VamsasListener, JsCallBack
@@ -20,7 +37,9 @@ public class MouseOverListener extends JSFunctionExec implements
 
   int i = -1;
 
-  public void mouseOver(SequenceI seq, int index, VamsasSource source)
+  @Override
+  public void mouseOverSequence(SequenceI seq, int index,
+          VamsasSource source)
   {
     if (seq != last || i != index)
     {
@@ -32,7 +51,6 @@ public class MouseOverListener extends JSFunctionExec implements
       AlignFrame src = null;
       try
       {
-        Vector win;
         if (source != null)
         {
           if (source instanceof jalview.appletgui.AlignViewport
@@ -42,9 +60,13 @@ public class MouseOverListener extends JSFunctionExec implements
             src = ((jalview.appletgui.AlignViewport) source).applet.currentAlignFrame;
 
           }
+          // TODO: ensure that if '_af' is specified along with a handler
+          // function, then only events from that alignFrame are sent to that
+          // function
         }
-        executeJavascriptFunction(_listener, new Object[]
-        { src, seq.getDisplayId(false), "" + (1 + i) });
+        executeJavascriptFunction(_listener,
+                new Object[] { src, seq.getDisplayId(false), "" + (1 + i),
+                    "" + seq.findPosition(i) });
       } catch (Exception ex)
       {