X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjavascript%2FMouseOverStructureListener.java;h=e79106d87ad9f4f354559df8063d2c8a665eb8eb;hb=refs%2Fheads%2Fbug%2FJAL-4290_headless_alignment_figure_with_sse;hp=8d83e75300f84e7cf0cb6a59b01ea31b40d24a27;hpb=2ab7b9b152018bb808693218ad88dc3778166492;p=jalview.git

diff --git a/src/jalview/javascript/MouseOverStructureListener.java b/src/jalview/javascript/MouseOverStructureListener.java
index 8d83e75..e79106d 100644
--- a/src/jalview/javascript/MouseOverStructureListener.java
+++ b/src/jalview/javascript/MouseOverStructureListener.java
@@ -156,8 +156,8 @@ public class MouseOverStructureListener extends JSFunctionExec
                     "" + (atom.getPdbResNum()), "" + atom.getAtomIndex() });
       } catch (Exception ex)
       {
-        System.err.println("Couldn't execute callback with " + _listenerfn
-                + " for atomSpec: " + atom);
+        jalview.bin.Console.errPrintln("Couldn't execute callback with "
+                + _listenerfn + " for atomSpec: " + atom);
         ex.printStackTrace();
       }
     }
@@ -172,7 +172,7 @@ public class MouseOverStructureListener extends JSFunctionExec
 
     if (JalviewLite.debug)
     {
-      System.err.println(
+      jalview.bin.Console.errPrintln(
               this.getClass().getName() + " modelSet[0]: " + modelSet[0]);
       ssm.reportMapping();
     }
@@ -197,7 +197,7 @@ public class MouseOverStructureListener extends JSFunctionExec
         }
         // if (jvlite.debug)
         // {
-        // System.err.println("Mapped '" + modelSet[m] + "' to "
+        // jalview.bin.Console.errPrintln("Mapped '" + modelSet[m] + "' to "
         // + sequence[m].length + " sequences.");
         // }
       }
@@ -221,9 +221,8 @@ public class MouseOverStructureListener extends JSFunctionExec
       // structure
       ArrayList<String[]> ccomands = new ArrayList<>();
       ArrayList<String> pdbfn = new ArrayList<>();
-      String[] colcommands = new JmolCommands()
-              .colourBySequence(ssm, modelSet, sequence, sr,
-                      (AlignmentViewPanel) source);
+      String[] colcommands = new JmolCommands().colourBySequence(ssm,
+              modelSet, sequence, sr, (AlignmentViewPanel) source);
       if (colcommands == null)
       {
         return;
@@ -261,9 +260,9 @@ public class MouseOverStructureListener extends JSFunctionExec
           executeJavascriptFunction(true, _listenerfn, st);
         } catch (Exception ex)
         {
-          System.err.println("Couldn't execute callback with " + _listenerfn
-                  + " using args { " + st[0] + ", " + st[1] + ", " + st[2]
-                  + "," + st[3] + "}"); // + ","+st[4]+"\n");
+          jalview.bin.Console.errPrintln("Couldn't execute callback with "
+                  + _listenerfn + " using args { " + st[0] + ", " + st[1]
+                  + ", " + st[2] + "," + st[3] + "}"); // + ","+st[4]+"\n");
           ex.printStackTrace();
 
         }
@@ -275,7 +274,7 @@ public class MouseOverStructureListener extends JSFunctionExec
        * executeJavascriptFunction( false, _listenerfn, st = new String[] {
        * "colourstruct", "" + ((jalview.appletgui.AlignmentPanel) source).av
        * .getViewId(), handle, "" }); } catch (Exception ex) {
-       * System.err.println("Couldn't execute callback with " + _listenerfn +
+       * jalview.bin.Console.errPrintln("Couldn't execute callback with " + _listenerfn +
        * " using args { " + st[0] + ", " + st[1] + ", " + st[2] + "," + st[3] +
        * "\n"); ex.printStackTrace();
        *