X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbappletgui%2FGTreePanel.java;h=181071949e03789bc6474b0aa04008aef1b0ca67;hb=410d9890ee07332a70dbd72de8e828ce52f32179;hp=5224f619a57a331108c703b1f6db8898688f006e;hpb=e6fdb1363213fb04344942aa1bef590b23430af6;p=jalview.git

diff --git a/src/jalview/jbappletgui/GTreePanel.java b/src/jalview/jbappletgui/GTreePanel.java
index 5224f61..1810719 100755
--- a/src/jalview/jbappletgui/GTreePanel.java
+++ b/src/jalview/jbappletgui/GTreePanel.java
@@ -1,121 +1,121 @@
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/
 package jalview.jbappletgui;
 
 import java.awt.*;
 import java.awt.event.*;
 
-public class GTreePanel extends Frame
-{
-  BorderLayout borderLayout1 = new BorderLayout();
-  protected ScrollPane scrollPane = new ScrollPane();
-  MenuBar jMenuBar1 = new MenuBar();
-  Menu jMenu2 = new Menu();
-  protected MenuItem fontSize = new MenuItem();
-  protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();
-  protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();
-  protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();
-  Menu fileMenu = new Menu();
-  MenuItem newickOutput = new MenuItem();
 
-  public GTreePanel()
-  {
-    try
-    {
-      jbInit();
-      this.setMenuBar(jMenuBar1);
+public class GTreePanel extends Frame {
+    BorderLayout borderLayout1 = new BorderLayout();
+    protected ScrollPane scrollPane = new ScrollPane();
+    MenuBar jMenuBar1 = new MenuBar();
+    Menu jMenu2 = new Menu();
+    protected MenuItem fontSize = new MenuItem();
+    protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();
+    protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();
+    protected CheckboxMenuItem placeholdersMenu = new CheckboxMenuItem();
+    protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();
+    Menu fileMenu = new Menu();
+    MenuItem newickOutput = new MenuItem();
+
+    public GTreePanel() {
+        try {
+            jbInit();
+            this.setMenuBar(jMenuBar1);
+        } catch (Exception e) {
+            e.printStackTrace();
+        }
     }
-    catch(Exception e)
-    {
-      e.printStackTrace();
-    }
-
-  }
-  private void jbInit() throws Exception
-  {
-    setLayout(borderLayout1);
-    this.setBackground(Color.white);
-    this.setFont(new java.awt.Font("Verdana", 0, 12));
-    jMenu2.setLabel("View");
-    fontSize.setLabel("Font Size - 12");
-    fontSize.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        fontSize_actionPerformed(e);
-      }
-    });
-    bootstrapMenu.setLabel("Show Bootstrap values");
-    bootstrapMenu.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        bootstrapMenu_actionPerformed(null);
-      }
-    });
-    distanceMenu.setLabel("Show Distances");
-    distanceMenu.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        distanceMenu_actionPerformed(null);
-      }
-    });
-    fitToWindow.setState(true);
-    fitToWindow.setLabel("Fit to window");
-    fitToWindow.addItemListener(new java.awt.event.ItemListener()
-    {
-      public void itemStateChanged(ItemEvent e)
-      {
-        fitToWindow_actionPerformed(null);
-      }
-    });
-    fileMenu.setLabel("File");
-    newickOutput.setLabel("Newick Format");
-    newickOutput.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent actionEvent)
-      {
-        newickOutput_actionPerformed(actionEvent);
-      }
-    });
-    add(scrollPane, BorderLayout.CENTER);
-    jMenuBar1.add(fileMenu);
-    jMenuBar1.add(jMenu2);
-    jMenu2.add(fitToWindow);
-    jMenu2.add(fontSize);
-    jMenu2.add(distanceMenu);
-    jMenu2.add(bootstrapMenu);
-    fileMenu.add(newickOutput);
-  }
-
-
-  protected void printMenu_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void fontSize_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void distanceMenu_actionPerformed(ActionEvent e)
-  {
 
-  }
+    private void jbInit() throws Exception {
+        setLayout(borderLayout1);
+        this.setBackground(Color.white);
+        this.setFont(new java.awt.Font("Verdana", 0, 12));
+        jMenu2.setLabel("View");
+        fontSize.setLabel("Font Size - 12");
+        fontSize.addActionListener(new java.awt.event.ActionListener() {
+                public void actionPerformed(ActionEvent e) {
+                    fontSize_actionPerformed(e);
+                }
+            });
+        bootstrapMenu.setLabel("Show Bootstrap Values");
+        bootstrapMenu.addItemListener(new java.awt.event.ItemListener() {
+                public void itemStateChanged(ItemEvent e) {
+                    bootstrapMenu_actionPerformed(null);
+                }
+            });
+        distanceMenu.setLabel("Show Distances");
+        distanceMenu.addItemListener(new java.awt.event.ItemListener() {
+                public void itemStateChanged(ItemEvent e) {
+                    distanceMenu_actionPerformed(null);
+                }
+            });
+        placeholdersMenu.setLabel("Mark Unassociated Leaves");
+        placeholdersMenu.addItemListener(new java.awt.event.ItemListener() {
+                public void itemStateChanged(ItemEvent e) {
+                    placeholdersMenu_actionPerformed(null);
+                }
+            });
+        fitToWindow.setState(true);
+        fitToWindow.setLabel("Fit To Window");
+        fitToWindow.addItemListener(new java.awt.event.ItemListener() {
+                public void itemStateChanged(ItemEvent e) {
+                    fitToWindow_actionPerformed(null);
+                }
+            });
+        fileMenu.setLabel("File");
+        newickOutput.setLabel("Newick Format");
+        newickOutput.addActionListener(new ActionListener() {
+                public void actionPerformed(ActionEvent actionEvent) {
+                    newickOutput_actionPerformed(actionEvent);
+                }
+            });
+        add(scrollPane, BorderLayout.CENTER);
+        jMenuBar1.add(fileMenu);
+        jMenuBar1.add(jMenu2);
+        jMenu2.add(fitToWindow);
+        jMenu2.add(fontSize);
+        jMenu2.add(distanceMenu);
+        jMenu2.add(bootstrapMenu);
+        jMenu2.add(placeholdersMenu);
+        fileMenu.add(newickOutput);
+    }
 
-  protected void bootstrapMenu_actionPerformed(ActionEvent e)
-  {
+    protected void printMenu_actionPerformed(ActionEvent e) {
+    }
 
-  }
+    protected void fontSize_actionPerformed(ActionEvent e) {
+    }
 
-  protected void fitToWindow_actionPerformed(ActionEvent e)
-  {
+    protected void distanceMenu_actionPerformed(ActionEvent e) {
+    }
 
-  }
+    protected void bootstrapMenu_actionPerformed(ActionEvent e) {
+    }
 
-  public void newickOutput_actionPerformed(ActionEvent actionEvent)
-  {
+    protected void placeholdersMenu_actionPerformed(ActionEvent e) {
+    }
 
-  }
+    protected void fitToWindow_actionPerformed(ActionEvent e) {
+    }
 
+    public void newickOutput_actionPerformed(ActionEvent actionEvent) {
+    }
 }