X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;h=439a67d88c676180ce0fd46b1074d096fae00978;hb=bbfdb203ce3a889600caa52478478b75ab03809f;hp=4a7c3f07eaf4257cceb1ee19b75709ff0d3e365b;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 4a7c3f0..439a67d 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -314,6 +314,8 @@ public class GAlignFrame extends JInternalFrame
 
   protected JCheckBoxMenuItem showSequenceLogo = new JCheckBoxMenuItem();
 
+  protected JCheckBoxMenuItem normaliseSequenceLogo = new JCheckBoxMenuItem();
+
   protected JCheckBoxMenuItem applyAutoAnnotationSettings = new JCheckBoxMenuItem();
 
   private JMenuItem grpsFromSelection = new JMenuItem();
@@ -1113,6 +1115,16 @@ public class GAlignFrame extends JInternalFrame
       }
 
     });
+    normaliseSequenceLogo.setText("Normalise Consensus Logo");
+    normaliseSequenceLogo.addActionListener(new ActionListener()
+    {
+
+      public void actionPerformed(ActionEvent e)
+      {
+        normaliseSequenceLogo_actionPerformed(e);
+      }
+
+    });
     applyAutoAnnotationSettings.setText("Apply to all groups");
     applyAutoAnnotationSettings.setState(false);
     applyAutoAnnotationSettings.setVisible(true);
@@ -1783,6 +1795,7 @@ public class GAlignFrame extends JInternalFrame
     autoAnnMenu.add(applyAutoAnnotationSettings);
     autoAnnMenu.add(showConsensusHistogram);
     autoAnnMenu.add(showSequenceLogo);
+    autoAnnMenu.add(normaliseSequenceLogo);
     autoAnnMenu.addSeparator();
     autoAnnMenu.add(showGroupConservation);
     autoAnnMenu.add(showGroupConsensus);
@@ -1894,6 +1907,12 @@ public class GAlignFrame extends JInternalFrame
     //selectMenu.add(listenToViewSelections);
   }
 
+  protected void normaliseSequenceLogo_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
   protected void listenToViewSelections_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub