X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;h=5f30b578d3ac096bfd62cb3164490cc32ea5683a;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=9b9af7e24dc7f7d23d26621b903b26821079175b;hpb=bda1b6a4412a73727de4613cfe3a6829b0fe0804;p=jalview.git
diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 9b9af7e..5f30b57 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -1,6 +1,6 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
@@ -14,10 +14,12 @@
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.jbgui;
import jalview.schemes.ColourSchemeProperty;
+import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.Color;
@@ -138,6 +140,8 @@ public class GAlignFrame extends JInternalFrame
protected JRadioButtonMenuItem nucleotideColour = new JRadioButtonMenuItem();
protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
+
+ protected JRadioButtonMenuItem RNAInteractionColour = new JRadioButtonMenuItem();
// protected JRadioButtonMenuItem covariationColour = new
// JRadioButtonMenuItem();
@@ -240,6 +244,8 @@ public class GAlignFrame extends JInternalFrame
protected JMenuItem showTranslation = new JMenuItem();
protected JMenuItem extractScores = new JMenuItem();
+
+ protected JMenuItem expandAlignment = new JMenuItem();
protected JMenu showProducts = new JMenu();
@@ -407,8 +413,8 @@ public class GAlignFrame extends JInternalFrame
int option = JOptionPane.showInternalConfirmDialog(
jalview.gui.Desktop.desktop,
- "Remove from default list?",
- "Remove user defined colour",
+ MessageManager.getString("label.remove_from_default_list"),
+ MessageManager.getString("label.remove_user_defined_colour"),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
{
@@ -456,7 +462,7 @@ public class GAlignFrame extends JInternalFrame
colours.add(purinePyrimidineColour);
// colours.add(covariationColour);
colours.add(tcoffeeColour);
-
+ colours.add(RNAInteractionColour);
setColourSelected(jalview.bin.Cache
.getDefault("DEFAULT_COLOUR", "None"));
@@ -534,6 +540,11 @@ public class GAlignFrame extends JInternalFrame
purinePyrimidineColour.setSelected(true);
break;
+
+ case ColourSchemeProperty.RNAINTERACTION:
+ RNAInteractionColour.setSelected(true);
+
+ break;
/*
* case ColourSchemeProperty.COVARIATION:
* covariationColour.setSelected(true);
@@ -556,8 +567,8 @@ public class GAlignFrame extends JInternalFrame
private void jbInit() throws Exception
{
- fileMenu.setText("File");
- saveAs.setText("Save As...");
+ fileMenu.setText(MessageManager.getString("action.file"));
+ saveAs.setText(MessageManager.getString("action.save_as") + "...");
saveAs.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_S, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask()
@@ -569,7 +580,7 @@ public class GAlignFrame extends JInternalFrame
saveAs_actionPerformed(e);
}
});
- closeMenuItem.setText("Close");
+ closeMenuItem.setText(MessageManager.getString("action.close"));
closeMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_W, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -580,12 +591,12 @@ public class GAlignFrame extends JInternalFrame
closeMenuItem_actionPerformed(false);
}
});
- editMenu.setText("Edit");
- viewMenu.setText("View");
- colourMenu.setText("Colour");
- calculateMenu.setText("Calculate");
- webService.setText("Web Service");
- selectAllSequenceMenuItem.setText("Select All");
+ editMenu.setText(MessageManager.getString("action.edit"));
+ viewMenu.setText(MessageManager.getString("action.view"));
+ colourMenu.setText(MessageManager.getString("action.colour"));
+ calculateMenu.setText(MessageManager.getString("action.calculate"));
+ webService.setText(MessageManager.getString("action.web_service"));
+ selectAllSequenceMenuItem.setText(MessageManager.getString("action.select_all"));
selectAllSequenceMenuItem.setAccelerator(javax.swing.KeyStroke
.getKeyStroke(java.awt.event.KeyEvent.VK_A, Toolkit
.getDefaultToolkit().getMenuShortcutKeyMask(), false));
@@ -597,7 +608,7 @@ public class GAlignFrame extends JInternalFrame
selectAllSequenceMenuItem_actionPerformed(e);
}
});
- deselectAllSequenceMenuItem.setText("Deselect All");
+ deselectAllSequenceMenuItem.setText(MessageManager.getString("action.deselect_all"));
deselectAllSequenceMenuItem.setAccelerator(javax.swing.KeyStroke
.getKeyStroke(java.awt.event.KeyEvent.VK_ESCAPE, 0, false));
deselectAllSequenceMenuItem
@@ -608,7 +619,7 @@ public class GAlignFrame extends JInternalFrame
deselectAllSequenceMenuItem_actionPerformed(e);
}
});
- invertSequenceMenuItem.setText("Invert Sequence Selection");
+ invertSequenceMenuItem.setText(MessageManager.getString("action.invert_sequence_selection"));
invertSequenceMenuItem.setAccelerator(javax.swing.KeyStroke
.getKeyStroke(java.awt.event.KeyEvent.VK_I, Toolkit
.getDefaultToolkit().getMenuShortcutKeyMask(), false));
@@ -620,7 +631,7 @@ public class GAlignFrame extends JInternalFrame
invertSequenceMenuItem_actionPerformed(e);
}
});
- grpsFromSelection.setText("Make Groups For Selection");
+ grpsFromSelection.setText(MessageManager.getString("action.make_groups_selection"));
grpsFromSelection.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -628,8 +639,16 @@ public class GAlignFrame extends JInternalFrame
makeGrpsFromSelection_actionPerformed(e);
}
});
-
- remove2LeftMenuItem.setText("Remove Left");
+ expandAlignment.setText(MessageManager.getString("action.view_flanking_regions"));
+ expandAlignment.setToolTipText(MessageManager.getString("label.view_flanking_regions"));
+ expandAlignment.addActionListener(new java.awt.event.ActionListener() {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ expand_newalign(e);
+ }
+ });
+ remove2LeftMenuItem.setText(MessageManager.getString("action.remove_left"));
remove2LeftMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_L, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -641,7 +660,7 @@ public class GAlignFrame extends JInternalFrame
remove2LeftMenuItem_actionPerformed(e);
}
});
- remove2RightMenuItem.setText("Remove Right");
+ remove2RightMenuItem.setText(MessageManager.getString("action.remove_right"));
remove2RightMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_R, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -653,7 +672,7 @@ public class GAlignFrame extends JInternalFrame
remove2RightMenuItem_actionPerformed(e);
}
});
- removeGappedColumnMenuItem.setText("Remove Empty Columns");
+ removeGappedColumnMenuItem.setText(MessageManager.getString("action.remove_empty_columns"));
removeGappedColumnMenuItem.setAccelerator(javax.swing.KeyStroke
.getKeyStroke(java.awt.event.KeyEvent.VK_E, Toolkit
.getDefaultToolkit().getMenuShortcutKeyMask(), false));
@@ -665,7 +684,7 @@ public class GAlignFrame extends JInternalFrame
removeGappedColumnMenuItem_actionPerformed(e);
}
});
- removeAllGapsMenuItem.setText("Remove All Gaps");
+ removeAllGapsMenuItem.setText(MessageManager.getString("action.remove_all_gaps"));
removeAllGapsMenuItem.setAccelerator(javax.swing.KeyStroke
.getKeyStroke(java.awt.event.KeyEvent.VK_E, Toolkit
.getDefaultToolkit().getMenuShortcutKeyMask()
@@ -678,7 +697,7 @@ public class GAlignFrame extends JInternalFrame
removeAllGapsMenuItem_actionPerformed(e);
}
});
- justifyLeftMenuItem.setText("Left Justify Alignment");
+ justifyLeftMenuItem.setText(MessageManager.getString("action.left_justify_alignment"));
justifyLeftMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -687,7 +706,7 @@ public class GAlignFrame extends JInternalFrame
justifyLeftMenuItem_actionPerformed(e);
}
});
- justifyRightMenuItem.setText("Right Justify Alignment");
+ justifyRightMenuItem.setText(MessageManager.getString("action.right_justify_alignment"));
justifyRightMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -696,7 +715,7 @@ public class GAlignFrame extends JInternalFrame
justifyRightMenuItem_actionPerformed(e);
}
});
- viewBoxesMenuItem.setText("Boxes");
+ viewBoxesMenuItem.setText(MessageManager.getString("action.boxes"));
viewBoxesMenuItem.setState(true);
viewBoxesMenuItem.addActionListener(new java.awt.event.ActionListener()
{
@@ -705,7 +724,7 @@ public class GAlignFrame extends JInternalFrame
viewBoxesMenuItem_actionPerformed(e);
}
});
- viewTextMenuItem.setText("Text");
+ viewTextMenuItem.setText(MessageManager.getString("action.text"));
viewTextMenuItem.setState(true);
viewTextMenuItem.addActionListener(new java.awt.event.ActionListener()
{
@@ -714,7 +733,7 @@ public class GAlignFrame extends JInternalFrame
viewTextMenuItem_actionPerformed(e);
}
});
- showNonconservedMenuItem.setText("Show nonconserved");
+ showNonconservedMenuItem.setText(MessageManager.getString("label.show_non_conversed"));
showNonconservedMenuItem.setState(false);
showNonconservedMenuItem
.addActionListener(new java.awt.event.ActionListener()
@@ -724,7 +743,7 @@ public class GAlignFrame extends JInternalFrame
showUnconservedMenuItem_actionPerformed(e);
}
});
- sortPairwiseMenuItem.setText("by Pairwise Identity");
+ sortPairwiseMenuItem.setText(MessageManager.getString("action.by_pairwise_id"));
sortPairwiseMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -733,7 +752,7 @@ public class GAlignFrame extends JInternalFrame
sortPairwiseMenuItem_actionPerformed(e);
}
});
- sortIDMenuItem.setText("by ID");
+ sortIDMenuItem.setText(MessageManager.getString("action.by_id"));
sortIDMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -741,7 +760,7 @@ public class GAlignFrame extends JInternalFrame
sortIDMenuItem_actionPerformed(e);
}
});
- sortLengthMenuItem.setText("By Length");
+ sortLengthMenuItem.setText(MessageManager.getString("action.by_length"));
sortLengthMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -750,7 +769,7 @@ public class GAlignFrame extends JInternalFrame
sortLengthMenuItem_actionPerformed(e);
}
});
- sortGroupMenuItem.setText("by Group");
+ sortGroupMenuItem.setText(MessageManager.getString("action.by_group"));
sortGroupMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -758,7 +777,7 @@ public class GAlignFrame extends JInternalFrame
sortGroupMenuItem_actionPerformed(e);
}
});
- removeRedundancyMenuItem.setText("Remove Redundancy...");
+ removeRedundancyMenuItem.setText(MessageManager.getString("action.remove_redundancy"));
removeRedundancyMenuItem.setAccelerator(javax.swing.KeyStroke
.getKeyStroke(java.awt.event.KeyEvent.VK_D, Toolkit
.getDefaultToolkit().getMenuShortcutKeyMask(), false));
@@ -770,7 +789,7 @@ public class GAlignFrame extends JInternalFrame
removeRedundancyMenuItem_actionPerformed(e);
}
});
- pairwiseAlignmentMenuItem.setText("Pairwise Alignments...");
+ pairwiseAlignmentMenuItem.setText(MessageManager.getString("action.pairwise_alignment"));
pairwiseAlignmentMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -779,7 +798,7 @@ public class GAlignFrame extends JInternalFrame
pairwiseAlignmentMenuItem_actionPerformed(e);
}
});
- PCAMenuItem.setText("Principal Component Analysis");
+ PCAMenuItem.setText(MessageManager.getString("label.principal_component_analysis"));
PCAMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -788,7 +807,7 @@ public class GAlignFrame extends JInternalFrame
}
});
averageDistanceTreeMenuItem
- .setText("Average Distance Using % Identity");
+ .setText(MessageManager.getString("label.average_distance_identity"));
averageDistanceTreeMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -797,7 +816,7 @@ public class GAlignFrame extends JInternalFrame
averageDistanceTreeMenuItem_actionPerformed(e);
}
});
- neighbourTreeMenuItem.setText("Neighbour Joining Using % Identity");
+ neighbourTreeMenuItem.setText(MessageManager.getString("label.neighbour_joining_identity"));
neighbourTreeMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -811,9 +830,9 @@ public class GAlignFrame extends JInternalFrame
statusBar.setBackground(Color.white);
statusBar.setFont(new java.awt.Font("Verdana", 0, 11));
statusBar.setBorder(BorderFactory.createLineBorder(Color.black));
- statusBar.setText("Status bar");
- outputTextboxMenu.setText("Output to Textbox");
- clustalColour.setText("Clustalx");
+ statusBar.setText(MessageManager.getString("label.status_bar"));
+ outputTextboxMenu.setText(MessageManager.getString("label.out_to_textbox"));
+ clustalColour.setText(MessageManager.getString("label.clustalx"));
clustalColour.addActionListener(new java.awt.event.ActionListener()
{
@@ -822,7 +841,7 @@ public class GAlignFrame extends JInternalFrame
clustalColour_actionPerformed(e);
}
});
- zappoColour.setText("Zappo");
+ zappoColour.setText(MessageManager.getString("label.zappo"));
zappoColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -830,7 +849,7 @@ public class GAlignFrame extends JInternalFrame
zappoColour_actionPerformed(e);
}
});
- taylorColour.setText("Taylor");
+ taylorColour.setText(MessageManager.getString("label.taylor"));
taylorColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -838,7 +857,7 @@ public class GAlignFrame extends JInternalFrame
taylorColour_actionPerformed(e);
}
});
- hydrophobicityColour.setText("Hydrophobicity");
+ hydrophobicityColour.setText(MessageManager.getString("label.hydrophobicity"));
hydrophobicityColour
.addActionListener(new java.awt.event.ActionListener()
{
@@ -847,7 +866,7 @@ public class GAlignFrame extends JInternalFrame
hydrophobicityColour_actionPerformed(e);
}
});
- helixColour.setText("Helix Propensity");
+ helixColour.setText(MessageManager.getString("label.helix_propensity"));
helixColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -855,7 +874,7 @@ public class GAlignFrame extends JInternalFrame
helixColour_actionPerformed(e);
}
});
- strandColour.setText("Strand Propensity");
+ strandColour.setText(MessageManager.getString("label.strand_propensity"));
strandColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -863,7 +882,7 @@ public class GAlignFrame extends JInternalFrame
strandColour_actionPerformed(e);
}
});
- turnColour.setText("Turn Propensity");
+ turnColour.setText(MessageManager.getString("label.turn_propensity"));
turnColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -871,7 +890,7 @@ public class GAlignFrame extends JInternalFrame
turnColour_actionPerformed(e);
}
});
- buriedColour.setText("Buried Index");
+ buriedColour.setText(MessageManager.getString("label.buried_index"));
buriedColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -879,7 +898,7 @@ public class GAlignFrame extends JInternalFrame
buriedColour_actionPerformed(e);
}
});
- userDefinedColour.setText("User Defined...");
+ userDefinedColour.setText(MessageManager.getString("action.user_defined"));
userDefinedColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -887,7 +906,7 @@ public class GAlignFrame extends JInternalFrame
userDefinedColour_actionPerformed(e);
}
});
- PIDColour.setText("Percentage Identity");
+ PIDColour.setText(MessageManager.getString("label.percentage_identity"));
PIDColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -895,7 +914,7 @@ public class GAlignFrame extends JInternalFrame
PIDColour_actionPerformed(e);
}
});
- BLOSUM62Colour.setText("BLOSUM62 Score");
+ BLOSUM62Colour.setText(MessageManager.getString("label.blosum62_score"));
BLOSUM62Colour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -903,7 +922,7 @@ public class GAlignFrame extends JInternalFrame
BLOSUM62Colour_actionPerformed(e);
}
});
- nucleotideColour.setText("Nucleotide");
+ nucleotideColour.setText(MessageManager.getString("label.nucleotide"));
nucleotideColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -912,7 +931,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- purinePyrimidineColour.setText("Purine/Pyrimidine");
+ purinePyrimidineColour.setText(MessageManager.getString("label.purine_pyrimidine"));
purinePyrimidineColour
.addActionListener(new java.awt.event.ActionListener()
{
@@ -921,6 +940,15 @@ public class GAlignFrame extends JInternalFrame
purinePyrimidineColour_actionPerformed(e);
}
});
+
+ RNAInteractionColour.setText("RNA Interaction type");
+ RNAInteractionColour.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ RNAInteractionColour_actionPerformed(e);
+ }
+ });
/*
* covariationColour.setText("Covariation");
* covariationColour.addActionListener(new java.awt.event.ActionListener() {
@@ -928,7 +956,7 @@ public class GAlignFrame extends JInternalFrame
* covariationColour_actionPerformed(e); } });
*/
- avDistanceTreeBlosumMenuItem.setText("Average Distance Using BLOSUM62");
+ avDistanceTreeBlosumMenuItem.setText(MessageManager.getString("label.average_distance_bloslum62"));
avDistanceTreeBlosumMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -937,7 +965,7 @@ public class GAlignFrame extends JInternalFrame
avTreeBlosumMenuItem_actionPerformed(e);
}
});
- njTreeBlosumMenuItem.setText("Neighbour Joining using BLOSUM62");
+ njTreeBlosumMenuItem.setText(MessageManager.getString("label.neighbour_blosum62"));
njTreeBlosumMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -947,7 +975,7 @@ public class GAlignFrame extends JInternalFrame
}
});
annotationPanelMenuItem.setActionCommand("");
- annotationPanelMenuItem.setText("Show Annotations");
+ annotationPanelMenuItem.setText(MessageManager.getString("label.show_annotations"));
annotationPanelMenuItem.setState(jalview.bin.Cache.getDefault(
"SHOW_ANNOTATIONS", true));
annotationPanelMenuItem
@@ -958,7 +986,7 @@ public class GAlignFrame extends JInternalFrame
annotationPanelMenuItem_actionPerformed(e);
}
});
- colourTextMenuItem.setText("Colour Text");
+ colourTextMenuItem.setText(MessageManager.getString("label.colour_text"));
colourTextMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -967,7 +995,7 @@ public class GAlignFrame extends JInternalFrame
colourTextMenuItem_actionPerformed(e);
}
});
- htmlMenuItem.setText("HTML");
+ htmlMenuItem.setText(MessageManager.getString("label.html"));
htmlMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -975,7 +1003,7 @@ public class GAlignFrame extends JInternalFrame
htmlMenuItem_actionPerformed(e);
}
});
- overviewMenuItem.setText("Overview Window");
+ overviewMenuItem.setText(MessageManager.getString("label.overview_window"));
overviewMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -984,7 +1012,7 @@ public class GAlignFrame extends JInternalFrame
}
});
undoMenuItem.setEnabled(false);
- undoMenuItem.setText("Undo");
+ undoMenuItem.setText(MessageManager.getString("action.undo"));
undoMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_Z, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -996,7 +1024,7 @@ public class GAlignFrame extends JInternalFrame
}
});
redoMenuItem.setEnabled(false);
- redoMenuItem.setText("Redo");
+ redoMenuItem.setText(MessageManager.getString("action.redo"));
redoMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_Y, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1007,7 +1035,7 @@ public class GAlignFrame extends JInternalFrame
redoMenuItem_actionPerformed(e);
}
});
- conservationMenuItem.setText("By Conservation");
+ conservationMenuItem.setText(MessageManager.getString("action.by_conservation"));
conservationMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -1016,7 +1044,7 @@ public class GAlignFrame extends JInternalFrame
conservationMenuItem_actionPerformed(e);
}
});
- noColourmenuItem.setText("None");
+ noColourmenuItem.setText(MessageManager.getString("label.none"));
noColourmenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1024,7 +1052,7 @@ public class GAlignFrame extends JInternalFrame
noColourmenuItem_actionPerformed(e);
}
});
- wrapMenuItem.setText("Wrap");
+ wrapMenuItem.setText(MessageManager.getString("label.wrap"));
wrapMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1032,7 +1060,7 @@ public class GAlignFrame extends JInternalFrame
wrapMenuItem_actionPerformed(e);
}
});
- printMenuItem.setText("Print ...");
+ printMenuItem.setText(MessageManager.getString("action.print") + "...");
printMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_P, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1043,7 +1071,7 @@ public class GAlignFrame extends JInternalFrame
printMenuItem_actionPerformed(e);
}
});
- renderGapsMenuItem.setText("Show Gaps");
+ renderGapsMenuItem.setText(MessageManager.getString("action.show_gaps"));
renderGapsMenuItem.setState(true);
renderGapsMenuItem
.addActionListener(new java.awt.event.ActionListener()
@@ -1053,7 +1081,7 @@ public class GAlignFrame extends JInternalFrame
renderGapsMenuItem_actionPerformed(e);
}
});
- findMenuItem.setText("Find...");
+ findMenuItem.setText(MessageManager.getString("action.find"));
findMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_F, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1064,7 +1092,7 @@ public class GAlignFrame extends JInternalFrame
findMenuItem_actionPerformed(e);
}
});
- abovePIDThreshold.setText("Above Identity Threshold");
+ abovePIDThreshold.setText(MessageManager.getString("label.above_identity_threshold"));
abovePIDThreshold.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1072,7 +1100,7 @@ public class GAlignFrame extends JInternalFrame
abovePIDThreshold_actionPerformed(e);
}
});
- showSeqFeatures.setText("Show Sequence Features");
+ showSeqFeatures.setText(MessageManager.getString("label.show_sequence_features"));
showSeqFeatures.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent actionEvent)
@@ -1086,7 +1114,7 @@ public class GAlignFrame extends JInternalFrame
* void actionPerformed(ActionEvent actionEvent) {
* showSeqFeaturesHeight_actionPerformed(actionEvent); } });
*/
- showDbRefsMenuitem.setText("Show Database Refs");
+ showDbRefsMenuitem.setText(MessageManager.getString("label.show_database_refs"));
showDbRefsMenuitem.addActionListener(new ActionListener()
{
@@ -1096,7 +1124,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- showNpFeatsMenuitem.setText("Show Non-Positional Features");
+ showNpFeatsMenuitem.setText(MessageManager.getString("label.show_non_positional_features"));
showNpFeatsMenuitem.addActionListener(new ActionListener()
{
@@ -1106,7 +1134,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- showGroupConservation.setText("Group Conservation");
+ showGroupConservation.setText(MessageManager.getString("label.group_conservation"));
showGroupConservation.addActionListener(new ActionListener()
{
@@ -1117,7 +1145,7 @@ public class GAlignFrame extends JInternalFrame
});
- showGroupConsensus.setText("Group Consensus");
+ showGroupConsensus.setText(MessageManager.getString("label.group_consensus"));
showGroupConsensus.addActionListener(new ActionListener()
{
@@ -1127,7 +1155,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- showConsensusHistogram.setText("Show Consensus Histogram");
+ showConsensusHistogram.setText(MessageManager.getString("label.show_consensus_histogram"));
showConsensusHistogram.addActionListener(new ActionListener()
{
@@ -1137,7 +1165,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- showSequenceLogo.setText("Show Consensus Logo");
+ showSequenceLogo.setText(MessageManager.getString("label.show_consensus_logo"));
showSequenceLogo.addActionListener(new ActionListener()
{
@@ -1147,7 +1175,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- normaliseSequenceLogo.setText("Normalise Consensus Logo");
+ normaliseSequenceLogo.setText(MessageManager.getString("label.norm_consensus_logo"));
normaliseSequenceLogo.addActionListener(new ActionListener()
{
@@ -1157,7 +1185,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- applyAutoAnnotationSettings.setText("Apply to all groups");
+ applyAutoAnnotationSettings.setText(MessageManager.getString("label.apply_all_groups"));
applyAutoAnnotationSettings.setState(false);
applyAutoAnnotationSettings.setVisible(true);
applyAutoAnnotationSettings.addActionListener(new ActionListener()
@@ -1170,7 +1198,7 @@ public class GAlignFrame extends JInternalFrame
});
- nucleotideColour.setText("Nucleotide");
+ nucleotideColour.setText(MessageManager.getString("label.nucleotide"));
nucleotideColour.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1179,7 +1207,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- tcoffeeColour.setText("T-Coffee scores");
+ tcoffeeColour.setText(MessageManager.getString("label.tcoffee_scores"));
tcoffeeColour.setEnabled(false);
tcoffeeColour.addActionListener(new ActionListener()
{
@@ -1191,7 +1219,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- deleteGroups.setText("Undefine groups");
+ deleteGroups.setText(MessageManager.getString("action.undefine_groups"));
deleteGroups.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_U, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1202,7 +1230,7 @@ public class GAlignFrame extends JInternalFrame
deleteGroups_actionPerformed(e);
}
});
- createGroup.setText("Create group");
+ createGroup.setText(MessageManager.getString("action.create_groups"));
createGroup.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_G, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1213,7 +1241,7 @@ public class GAlignFrame extends JInternalFrame
createGroup_actionPerformed(e);
}
});
- unGroup.setText("Remove Group");
+ unGroup.setText(MessageManager.getString("action.remove_group"));
unGroup.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_G,Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask() | java.awt.event.KeyEvent.SHIFT_MASK, false));
@@ -1224,7 +1252,7 @@ public class GAlignFrame extends JInternalFrame
unGroup_actionPerformed(e);
}
});
- copy.setText("Copy");
+ copy.setText(MessageManager.getString("action.copy"));
copy.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_C, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1236,7 +1264,7 @@ public class GAlignFrame extends JInternalFrame
copy_actionPerformed(e);
}
});
- cut.setText("Cut");
+ cut.setText(MessageManager.getString("action.cut"));
cut.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_X, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1247,7 +1275,7 @@ public class GAlignFrame extends JInternalFrame
cut_actionPerformed(e);
}
});
- delete.setText("Delete");
+ delete.setText(MessageManager.getString("action.delete"));
delete.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_BACK_SPACE, 0, false));
delete.addActionListener(new java.awt.event.ActionListener()
@@ -1257,8 +1285,8 @@ public class GAlignFrame extends JInternalFrame
delete_actionPerformed(e);
}
});
- pasteMenu.setText("Paste");
- pasteNew.setText("To New Alignment");
+ pasteMenu.setText(MessageManager.getString("action.paste"));
+ pasteNew.setText(MessageManager.getString("label.to_new_alignment"));
pasteNew.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_V, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask()
@@ -1270,7 +1298,7 @@ public class GAlignFrame extends JInternalFrame
pasteNew_actionPerformed(e);
}
});
- pasteThis.setText("Add To This Alignment");
+ pasteThis.setText(MessageManager.getString("label.to_this_alignment"));
pasteThis.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_V, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1281,7 +1309,7 @@ public class GAlignFrame extends JInternalFrame
pasteThis_actionPerformed(e);
}
});
- applyToAllGroups.setText("Apply Colour To All Groups");
+ applyToAllGroups.setText(MessageManager.getString("label.apply_colour_to_all_groups"));
applyToAllGroups.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1296,9 +1324,9 @@ public class GAlignFrame extends JInternalFrame
createPNG(null);
}
});
- createPNG.setActionCommand("Save As PNG Image");
+ createPNG.setActionCommand(MessageManager.getString("label.save_png_image"));
createPNG.setText("PNG");
- font.setText("Font...");
+ font.setText(MessageManager.getString("action.font"));
font.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1307,7 +1335,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- seqLimits.setText("Show Sequence Limits");
+ seqLimits.setText(MessageManager.getString("label.show_sequence_limits"));
seqLimits.setState(jalview.bin.Cache.getDefault("SHOW_JVSUFFIX", true));
seqLimits.addActionListener(new java.awt.event.ActionListener()
{
@@ -1324,8 +1352,8 @@ public class GAlignFrame extends JInternalFrame
createEPS(null);
}
});
- LoadtreeMenuItem.setActionCommand("Load a tree for this sequence set");
- LoadtreeMenuItem.setText("Load Associated Tree");
+ LoadtreeMenuItem.setActionCommand(MessageManager.getString("label.load_tree_for_sequence_set"));
+ LoadtreeMenuItem.setText(MessageManager.getString("label.load_associated_tree"));
LoadtreeMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1335,7 +1363,7 @@ public class GAlignFrame extends JInternalFrame
});
scaleAbove.setVisible(false);
- scaleAbove.setText("Scale Above");
+ scaleAbove.setText(MessageManager.getString("action.scale_above"));
scaleAbove.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1345,7 +1373,7 @@ public class GAlignFrame extends JInternalFrame
});
scaleLeft.setVisible(false);
scaleLeft.setSelected(true);
- scaleLeft.setText("Scale Left");
+ scaleLeft.setText(MessageManager.getString("action.scale_left"));
scaleLeft.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1355,7 +1383,7 @@ public class GAlignFrame extends JInternalFrame
});
scaleRight.setVisible(false);
scaleRight.setSelected(true);
- scaleRight.setText("Scale Right");
+ scaleRight.setText(MessageManager.getString("action.scale_right"));
scaleRight.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1365,7 +1393,7 @@ public class GAlignFrame extends JInternalFrame
});
centreColumnLabelsMenuItem.setVisible(true);
centreColumnLabelsMenuItem.setState(false);
- centreColumnLabelsMenuItem.setText("Centre Column Labels");
+ centreColumnLabelsMenuItem.setText(MessageManager.getString("label.centre_column_labels"));
centreColumnLabelsMenuItem
.addActionListener(new java.awt.event.ActionListener()
{
@@ -1376,7 +1404,7 @@ public class GAlignFrame extends JInternalFrame
});
followHighlightMenuItem.setVisible(true);
followHighlightMenuItem.setState(true);
- followHighlightMenuItem.setText("Automatic Scrolling");
+ followHighlightMenuItem.setText(MessageManager.getString("label.automatic_scrolling"));
followHighlightMenuItem.addActionListener(new ActionListener()
{
@@ -1387,7 +1415,7 @@ public class GAlignFrame extends JInternalFrame
});
- modifyPID.setText("Modify Identity Threshold...");
+ modifyPID.setText(MessageManager.getString("label.modify_identity_thereshold"));
modifyPID.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1395,7 +1423,7 @@ public class GAlignFrame extends JInternalFrame
modifyPID_actionPerformed(e);
}
});
- modifyConservation.setText("Modify Conservation Threshold...");
+ modifyConservation.setText(MessageManager.getString("label.modify_conservation_thereshold"));
modifyConservation
.addActionListener(new java.awt.event.ActionListener()
{
@@ -1404,8 +1432,8 @@ public class GAlignFrame extends JInternalFrame
modifyConservation_actionPerformed(e);
}
});
- sortByTreeMenu.setText("By Tree Order");
- sort.setText("Sort");
+ sortByTreeMenu.setText(MessageManager.getString("action.by_tree_order"));
+ sort.setText(MessageManager.getString("action.sort"));
sort.addMenuListener(new MenuListener()
{
public void menuSelected(MenuEvent e)
@@ -1421,7 +1449,7 @@ public class GAlignFrame extends JInternalFrame
{
}
});
- sortByAnnotScore.setText("by Score");
+ sortByAnnotScore.setText(MessageManager.getString("label.sort_by_score"));
sort.add(sortByAnnotScore);
sortByAnnotScore.addMenuListener(new javax.swing.event.MenuListener()
{
@@ -1441,10 +1469,10 @@ public class GAlignFrame extends JInternalFrame
});
sortByAnnotScore.setVisible(false);
- calculateTree.setText("Calculate Tree");
+ calculateTree.setText(MessageManager.getString("action.calculate_tree"));
- jMenu2.setText("Export Image");
- padGapsMenuitem.setText("Pad Gaps");
+ jMenu2.setText(MessageManager.getString("label.export_image"));
+ padGapsMenuitem.setText(MessageManager.getString("label.pad_gaps"));
padGapsMenuitem.setState(jalview.bin.Cache
.getDefault("PAD_GAPS", false));
padGapsMenuitem.addActionListener(new ActionListener()
@@ -1455,7 +1483,7 @@ public class GAlignFrame extends JInternalFrame
}
});
vamsasStore.setVisible(false);
- vamsasStore.setText("VAMSAS store");
+ vamsasStore.setText(MessageManager.getString("label.vamsas_store"));
vamsasStore.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1463,7 +1491,7 @@ public class GAlignFrame extends JInternalFrame
vamsasStore_actionPerformed(e);
}
});
- showTranslation.setText("Translate cDNA");
+ showTranslation.setText(MessageManager.getString("label.translate_cDNA"));
showTranslation.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1471,7 +1499,7 @@ public class GAlignFrame extends JInternalFrame
showTranslation_actionPerformed(e);
}
});
- extractScores.setText("Extract Scores...");
+ extractScores.setText(MessageManager.getString("label.extract_scores") + "...");
extractScores.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1481,14 +1509,14 @@ public class GAlignFrame extends JInternalFrame
});
extractScores.setVisible(true); // JBPNote: TODO: make gui for regex based
// score extraction
- showProducts.setText("Get Cross References");
+ showProducts.setText(MessageManager.getString("label.get_cross_refs"));
/*
* showProducts.addActionListener(new ActionListener() {
*
* public void actionPerformed(ActionEvent e) {
* showProducts_actionPerformed(e); } });
*/
- openFeatureSettings.setText("Feature Settings...");
+ openFeatureSettings.setText(MessageManager.getString("label.feature_settings"));
openFeatureSettings.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1496,7 +1524,7 @@ public class GAlignFrame extends JInternalFrame
featureSettings_actionPerformed(e);
}
});
- fetchSequence.setText("Fetch Sequence(s)...");
+ fetchSequence.setText(MessageManager.getString("label.fetch_sequences"));
fetchSequence.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1505,7 +1533,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- annotationColour.setText("By Annotation...");
+ annotationColour.setText(MessageManager.getString("action.by_annotation"));
annotationColour.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1514,7 +1542,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- rnahelicesColour.setText("By RNA helices");
+ rnahelicesColour.setText(MessageManager.getString("action.by_rna_helixes"));
rnahelicesColour.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1523,7 +1551,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- associatedData.setText("Load Features / Annotations");
+ associatedData.setText(MessageManager.getString("label.load_features_annotations"));
associatedData.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1531,7 +1559,7 @@ public class GAlignFrame extends JInternalFrame
associatedData_actionPerformed(e);
}
});
- autoCalculate.setText("Autocalculate Consensus");
+ autoCalculate.setText(MessageManager.getString("label.autocalculate_consensus"));
autoCalculate.setState(jalview.bin.Cache.getDefault(
"AUTO_CALC_CONSENSUS", true));
autoCalculate.addActionListener(new ActionListener()
@@ -1541,9 +1569,9 @@ public class GAlignFrame extends JInternalFrame
autoCalculate_actionPerformed(e);
}
});
- sortByTree.setText("Sort Alignment With New Tree");
+ sortByTree.setText(MessageManager.getString("label.sort_alignment_new_tree"));
sortByTree
- .setToolTipText("Enable this to automatically sort
the alignment when you open
a new tree.");
+ .setToolTipText("" + MessageManager.getString("label.enable_automatically_sort_alignment_when_open_new_tree"));
sortByTree
.setState(jalview.bin.Cache.getDefault("SORT_BY_TREE", false));
sortByTree.addActionListener(new ActionListener()
@@ -1554,9 +1582,9 @@ public class GAlignFrame extends JInternalFrame
}
});
- listenToViewSelections.setText("Listen for selections");
+ listenToViewSelections.setText(MessageManager.getString("label.listen_for_selections"));
listenToViewSelections
- .setToolTipText("When selected, selections in this view will mirror
selections made on the same sequences in other views.");
+ .setToolTipText("" + MessageManager.getString("label.selections_mirror_selections_made_same_sequences_other_views"));
listenToViewSelections.setState(false);
listenToViewSelections.addActionListener(new ActionListener()
{
@@ -1566,8 +1594,8 @@ public class GAlignFrame extends JInternalFrame
}
});
- addSequenceMenu.setText("Add Sequences");
- addFromFile.setText("From File");
+ addSequenceMenu.setText(MessageManager.getString("label.add_sequences"));
+ addFromFile.setText(MessageManager.getString("label.from_file"));
addFromFile.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1575,7 +1603,7 @@ public class GAlignFrame extends JInternalFrame
addFromFile_actionPerformed(e);
}
});
- addFromText.setText("From Textbox");
+ addFromText.setText(MessageManager.getString("label.from_textbox"));
addFromText.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1583,7 +1611,7 @@ public class GAlignFrame extends JInternalFrame
addFromText_actionPerformed(e);
}
});
- addFromURL.setText("From URL");
+ addFromURL.setText(MessageManager.getString("label.from_url"));
addFromURL.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1591,7 +1619,7 @@ public class GAlignFrame extends JInternalFrame
addFromURL_actionPerformed(e);
}
});
- exportFeatures.setText("Export Features...");
+ exportFeatures.setText(MessageManager.getString("label.export_features"));
exportFeatures.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1599,7 +1627,7 @@ public class GAlignFrame extends JInternalFrame
exportFeatures_actionPerformed(e);
}
});
- exportAnnotations.setText("Export Annotations...");
+ exportAnnotations.setText(MessageManager.getString("label.export_annotations"));
exportAnnotations.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1608,9 +1636,9 @@ public class GAlignFrame extends JInternalFrame
}
});
statusPanel.setLayout(gridLayout1);
- jMenu3.setText("Show");
- showAllSeqs.setText("All Sequences");
- showAllSeqs.setToolTipText("Shift+H toggles sequence visiblity.");
+ jMenu3.setText(MessageManager.getString("action.show"));
+ showAllSeqs.setText(MessageManager.getString("label.all_sequences"));
+ showAllSeqs.setToolTipText(MessageManager.getString("label.toggle_sequence_visibility"));
showAllSeqs.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1618,8 +1646,8 @@ public class GAlignFrame extends JInternalFrame
showAllSeqs_actionPerformed(e);
}
});
- showAllColumns.setText("All Columns");
- showAllColumns.setToolTipText("Ctrl+H toggles column visiblity.");
+ showAllColumns.setText(MessageManager.getString("label.all_columns"));
+ showAllColumns.setToolTipText(MessageManager.getString("label.toggle_columns_visibility"));
showAllColumns.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1627,9 +1655,9 @@ public class GAlignFrame extends JInternalFrame
showAllColumns_actionPerformed(e);
}
});
- hideMenu.setText("Hide");
- hideSelSequences.setText("Selected Sequences");
- hideSelSequences.setToolTipText("Shift+H toggles sequence visiblity.");
+ hideMenu.setText(MessageManager.getString("action.hide"));
+ hideSelSequences.setText(MessageManager.getString("label.selected_sequences"));
+ hideSelSequences.setToolTipText(MessageManager.getString("label.toggle_sequence_visibility"));
hideSelSequences.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1637,8 +1665,8 @@ public class GAlignFrame extends JInternalFrame
hideSelSequences_actionPerformed(e);
}
});
- hideSelColumns.setText("Selected Columns");
- hideSelColumns.setToolTipText("Ctrl+H toggles column visiblity.");
+ hideSelColumns.setText(MessageManager.getString("label.selected_columns"));
+ hideSelColumns.setToolTipText(MessageManager.getString("label.toggle_columns_visibility"));
hideSelColumns.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1646,7 +1674,7 @@ public class GAlignFrame extends JInternalFrame
hideSelColumns_actionPerformed(e);
}
});
- hideAllSelection.setText("Selected Region");
+ hideAllSelection.setText(MessageManager.getString("label.selected_region"));
hideAllSelection.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1655,7 +1683,7 @@ public class GAlignFrame extends JInternalFrame
}
});
// TODO: should be hidden if no selection exists.
- hideAllButSelection.setText("All but Selected Region (Shift+Ctrl+H)");
+ hideAllButSelection.setText(MessageManager.getString("label.all_but_selected_region"));
hideAllButSelection.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1663,9 +1691,9 @@ public class GAlignFrame extends JInternalFrame
hideAllButSelection_actionPerformed(e);
}
});
- showAllhidden.setText("All Sequences and Columns");
+ showAllhidden.setText(MessageManager.getString("label.all_sequences_columns"));
showAllhidden
- .setToolTipText("H toggles visibility of hidden or selected regions.");
+ .setToolTipText(MessageManager.getString("label.toggles_visibility_hidden_selected_regions"));
showAllhidden.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1674,7 +1702,7 @@ public class GAlignFrame extends JInternalFrame
}
});
- hiddenMarkers.setText("Show Hidden Markers");
+ hiddenMarkers.setText(MessageManager.getString("action.show_hidden_markers"));
hiddenMarkers.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1682,7 +1710,7 @@ public class GAlignFrame extends JInternalFrame
hiddenMarkers_actionPerformed(e);
}
});
- invertColSel.setText("Invert Column Selection");
+ invertColSel.setText(MessageManager.getString("action.invert_column_selection"));
invertColSel.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_I, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask()
@@ -1717,7 +1745,7 @@ public class GAlignFrame extends JInternalFrame
tabbedPane_focusGained(e);
}
});
- save.setText("Save");
+ save.setText(MessageManager.getString("action.save"));
save.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_S, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1729,7 +1757,7 @@ public class GAlignFrame extends JInternalFrame
}
});
reload.setEnabled(false);
- reload.setText("Reload");
+ reload.setText(MessageManager.getString("action.reload"));
reload.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1737,7 +1765,7 @@ public class GAlignFrame extends JInternalFrame
reload_actionPerformed(e);
}
});
- newView.setText("New View");
+ newView.setText(MessageManager.getString("action.new_view"));
newView.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_T, Toolkit.getDefaultToolkit()
.getMenuShortcutKeyMask(), false));
@@ -1748,9 +1776,8 @@ public class GAlignFrame extends JInternalFrame
newView_actionPerformed(e);
}
});
- tabbedPane.setToolTipText(" Right-click to rename tab"
- + "
Press X to eXpand tabs, G to reGroup.");
- textColour.setText("Colour Text ...");
+ tabbedPane.setToolTipText("" + MessageManager.getString("label.rename_tab_eXpand_reGroup") + "");
+ textColour.setText(MessageManager.getString("label.colour_text") + "...");
textColour.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1758,9 +1785,9 @@ public class GAlignFrame extends JInternalFrame
textColour_actionPerformed(e);
}
});
- formatMenu.setText("Format");
- selectMenu.setText("Select");
- idRightAlign.setText("Right Align Sequence Id");
+ formatMenu.setText(MessageManager.getString("action.format"));
+ selectMenu.setText(MessageManager.getString("action.select"));
+ idRightAlign.setText(MessageManager.getString("label.right_align_sequence_id"));
idRightAlign.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1769,7 +1796,7 @@ public class GAlignFrame extends JInternalFrame
}
});
gatherViews.setEnabled(false);
- gatherViews.setText("Gather Views");
+ gatherViews.setText(MessageManager.getString("action.gather_views"));
gatherViews.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_G, 0, false));
gatherViews.addActionListener(new ActionListener()
@@ -1780,7 +1807,7 @@ public class GAlignFrame extends JInternalFrame
}
});
expandViews.setEnabled(false);
- expandViews.setText("Expand Views");
+ expandViews.setText(MessageManager.getString("action.expand_views"));
expandViews.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_X, 0, false));
expandViews.addActionListener(new ActionListener()
@@ -1790,7 +1817,7 @@ public class GAlignFrame extends JInternalFrame
expandViews_actionPerformed(e);
}
});
- pageSetup.setText("Page Setup ...");
+ pageSetup.setText(MessageManager.getString("action.page_setup") + "...");
pageSetup.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@ -1798,7 +1825,7 @@ public class GAlignFrame extends JInternalFrame
pageSetup_actionPerformed(e);
}
});
- alignmentProperties.setText("Alignment Properties...");
+ alignmentProperties.setText(MessageManager.getString("label.alignment_props") + "...");
alignmentProperties.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent actionEvent)
@@ -1806,8 +1833,8 @@ public class GAlignFrame extends JInternalFrame
alignmentProperties();
}
});
- tooltipSettingsMenu.setText("Sequence ID Tooltip");
- autoAnnMenu.setText("Autocalculated Annotation");
+ tooltipSettingsMenu.setText(MessageManager.getString("label.sequence_id_tooltip"));
+ autoAnnMenu.setText(MessageManager.getString("label.autocalculated_annotation"));
alignFrameMenuBar.add(fileMenu);
alignFrameMenuBar.add(editMenu);
alignFrameMenuBar.add(selectMenu);
@@ -1898,6 +1925,7 @@ public class GAlignFrame extends JInternalFrame
colourMenu.add(buriedColour);
colourMenu.add(nucleotideColour);
colourMenu.add(purinePyrimidineColour);
+ colourMenu.add(RNAInteractionColour);
// colourMenu.add(covariationColour);
colourMenu.add(tcoffeeColour);
colourMenu.add(userDefinedColour);
@@ -1907,7 +1935,7 @@ public class GAlignFrame extends JInternalFrame
colourMenu.add(abovePIDThreshold);
colourMenu.add(modifyPID);
colourMenu.add(annotationColour);
- colourMenu.add(rnahelicesColour);
+ colourMenu.add(rnahelicesColour);
calculateMenu.add(sort);
calculateMenu.add(calculateTree);
calculateMenu.addSeparator();
@@ -1920,7 +1948,7 @@ public class GAlignFrame extends JInternalFrame
calculateMenu.add(sortByTree);
calculateMenu.addSeparator();
calculateMenu.add(extractScores);
- webServiceNoServices = new JMenuItem("");
+ webServiceNoServices = new JMenuItem(MessageManager.getString("label.no_services"));
webService.add(webServiceNoServices);
pasteMenu.add(pasteNew);
pasteMenu.add(pasteThis);
@@ -1929,10 +1957,6 @@ public class GAlignFrame extends JInternalFrame
sort.add(sortGroupMenuItem);
sort.add(sortPairwiseMenuItem);
sort.add(sortByTreeMenu);
- calculateTree.add(averageDistanceTreeMenuItem);
- calculateTree.add(neighbourTreeMenuItem);
- calculateTree.add(avDistanceTreeBlosumMenuItem);
- calculateTree.add(njTreeBlosumMenuItem);
jMenu2.add(htmlMenuItem);
jMenu2.add(epsFile);
jMenu2.add(createPNG);
@@ -1975,6 +1999,7 @@ public class GAlignFrame extends JInternalFrame
selectMenu.add(unGroup);
selectMenu.add(grpsFromSelection);
selectMenu.add(deleteGroups);
+ calculateMenu.add(expandAlignment);
// TODO - determine if the listenToViewSelections button is needed : see bug
// JAL-574
// selectMenu.addSeparator();
@@ -2294,6 +2319,11 @@ public class GAlignFrame extends JInternalFrame
protected void purinePyrimidineColour_actionPerformed(ActionEvent e)
{
}
+
+ protected void RNAInteractionColour_actionPerformed(ActionEvent e)
+ {
+ }
+
/*
* protected void covariationColour_actionPerformed(ActionEvent e) { }
@@ -2615,4 +2645,10 @@ public class GAlignFrame extends JInternalFrame
{
}
+
+ protected void expand_newalign(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
}