X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;h=8aa5159c513a23e422650bc3ed8b8e9cb15e2428;hb=fb4c54617dd9c5ac605853551478596902f34541;hp=83bea2356735b8a1ac8b07607d64e76ad71d3ed7;hpb=2ac5b6423fe366e093c8f12b0935aefc9aafbe5f;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 83bea23..8aa5159 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -136,7 +136,6 @@ public class GAlignFrame
   JMenuItem hideSelSequences = new JMenuItem();
   JMenuItem hideSelColumns = new JMenuItem();
   protected JCheckBoxMenuItem hiddenMarkers = new JCheckBoxMenuItem();
-  JMenu jMenu5 = new JMenu();
 
   public GAlignFrame()
   {
@@ -148,7 +147,7 @@ public class GAlignFrame
       setJMenuBar(alignFrameMenuBar);
 
       // dynamically fill save as menu with available formats
-      for (int i = 0; i < jalview.io.FormatAdapter.formats.size(); i++)
+      for (int i = 0; i < jalview.io.FormatAdapter.formats.size()-1; i++)
       {
         JMenuItem item = new JMenuItem( (String) jalview.io.FormatAdapter.formats.
                              elementAt(
@@ -1078,7 +1077,6 @@ public class GAlignFrame
         hiddenMarkers_actionPerformed(e);
       }
     });
-    jMenu5.setText("Associate Structure With Sequence");
 
     alignFrameMenuBar.add(fileMenu);
     alignFrameMenuBar.add(editMenu);
@@ -1096,8 +1094,6 @@ public class GAlignFrame
     fileMenu.add(outputTextboxMenu);
     fileMenu.add(printMenuItem);
     fileMenu.addSeparator();
-    fileMenu.add(jMenu5);
-    fileMenu.addSeparator();
     fileMenu.add(exportFeatures);
     fileMenu.add(exportAnnotations);
     fileMenu.add(LoadtreeMenuItem);