X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;h=f7b1342f51abaf9967405358384606d7a0e769fc;hb=7b5010ef9c87b8af5e4e51aba5fba47c5aa43c9a;hp=6ec19e26b75493d5b659b9ea3e905c2805cb2c0d;hpb=4e988b599b29712e28b5746d7594c33c67cd2f74;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 6ec19e2..f7b1342 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -115,9 +115,10 @@ public class GAlignFrame
   protected ButtonGroup colours = new ButtonGroup();
   JMenuItem vamsasStore = new JMenuItem();
   protected JCheckBoxMenuItem showTranslation = new JCheckBoxMenuItem();
-  protected JTabbedPane tabbedPane = new JTabbedPane();
-  protected JMenuItem featureSettings = new JMenuItem();
+  //protected JTabbedPane tabbedPane = new JTabbedPane();
+  public JMenuItem featureSettings = new JMenuItem();
   public JCheckBoxMenuItem seqDBRef = new JCheckBoxMenuItem();
+  JMenuItem fetchSequence = new JMenuItem();
 
   public GAlignFrame()
   {
@@ -476,21 +477,6 @@ public class GAlignFrame
     });
     this.getContentPane().setLayout(borderLayout1);
     alignFrameMenuBar.setFont(new java.awt.Font("Verdana", 0, 11));
-    alignFrameMenuBar.addAncestorListener(new AncestorListener()
-    {
-      public void ancestorAdded(AncestorEvent event)
-      {
-        alignFrameMenuBar_ancestorAdded(event);
-      }
-
-      public void ancestorRemoved(AncestorEvent event)
-      {
-      }
-
-      public void ancestorMoved(AncestorEvent event)
-      {
-      }
-    });
     statusBar.setBackground(Color.white);
     statusBar.setFont(new java.awt.Font("Verdana", 0, 11));
     statusBar.setBorder(BorderFactory.createLineBorder(Color.black));
@@ -912,6 +898,7 @@ public class GAlignFrame
         padGapsMenuitem_actionPerformed(e);
       }
     });
+    vamsasStore.setVisible(false);
     vamsasStore.setText("VAMSAS store");
     vamsasStore.addActionListener(new ActionListener()
     {
@@ -929,14 +916,14 @@ public class GAlignFrame
       }
     });
 
-    tabbedPane.addChangeListener(new ChangeListener()
+   /* tabbedPane.addChangeListener(new ChangeListener()
         {
           public void stateChanged(ChangeEvent ece)
           {
 
             tabSelected();
           }
-        });
+        });*/
     featureSettings.setEnabled(false);
     featureSettings.setText("Feature Settings...");
     featureSettings.addActionListener(new ActionListener()
@@ -947,7 +934,7 @@ public class GAlignFrame
       }
     });
     seqDBRef.setState( jalview.bin.Cache.getDefault("SHOW_DBPREFIX",true));
-    seqDBRef.setText("Show Sequence DB Refs");
+    seqDBRef.setText("Show Full Sequence Id");
     seqDBRef.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -955,6 +942,14 @@ public class GAlignFrame
         seqDBRef_actionPerformed(e);
       }
     });
+    fetchSequence.setText("Fetch Sequence...");
+    fetchSequence.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        fetchSequence_actionPerformed(e);
+      }
+    });
     alignFrameMenuBar.add(fileMenu);
     alignFrameMenuBar.add(editMenu);
     alignFrameMenuBar.add(searchMenu);
@@ -962,6 +957,7 @@ public class GAlignFrame
     alignFrameMenuBar.add(colourMenu);
     alignFrameMenuBar.add(calculateMenu);
     alignFrameMenuBar.add(webService);
+    fileMenu.add(fetchSequence);
     fileMenu.add(vamsasStore);
     fileMenu.add(saveAlignmentMenu);
     fileMenu.add(jMenu2);
@@ -1039,7 +1035,7 @@ public class GAlignFrame
     webServiceNoServices=new JMenuItem("<No Services>");
     webService.add(webServiceNoServices);
     this.getContentPane().add(statusBar, BorderLayout.SOUTH);
-    this.getContentPane().add(tabbedPane, java.awt.BorderLayout.CENTER);
+  //  this.getContentPane().add(tabbedPane, java.awt.BorderLayout.CENTER);
     jMenu1.add(pasteNew);
     jMenu1.add(pasteThis);
     sort.add(sortIDMenuItem);
@@ -1166,10 +1162,6 @@ public class GAlignFrame
   {
   }
 
-  protected void clustalAlignMenuItem_actionPerformed(ActionEvent e)
-  {
-  }
-
   protected void clustalColour_actionPerformed(ActionEvent e)
   {
   }
@@ -1324,17 +1316,7 @@ public class GAlignFrame
   {
   }
 
-  protected void preferences_actionPerformed(ActionEvent e)
-  {
-  }
 
-  protected void msaAlignMenuItem_actionPerformed(ActionEvent e)
-  {
-  }
-
-  protected void alignFrameMenuBar_ancestorAdded(AncestorEvent event)
-  {
-  }
 
   protected void saveAlignmentMenu_actionPerformed(ActionEvent e)
   {
@@ -1344,9 +1326,6 @@ public class GAlignFrame
   {
   }
 
-  protected void ClustalRealign_actionPerformed(ActionEvent e)
-  {
-  }
 
   public void vamsasStore_actionPerformed(ActionEvent e)
   {
@@ -1373,4 +1352,8 @@ public class GAlignFrame
 
   }
 
+  public void fetchSequence_actionPerformed(ActionEvent e)
+  {
+
+  }
 }