X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignmentPanel.java;h=2f0c75ece575d409a4a885c9423bbe5164c3c2c8;hb=refs%2Fheads%2Fspike%2FJAL-4047%2FJAL-4048_columns_in_sequenceID;hp=5cbdeb78eb15ab861fd986457935d04f53c48043;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignmentPanel.java b/src/jalview/jbgui/GAlignmentPanel.java
index 5cbdeb7..2f0c75e 100755
--- a/src/jalview/jbgui/GAlignmentPanel.java
+++ b/src/jalview/jbgui/GAlignmentPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -31,42 +31,27 @@ import javax.swing.JScrollBar;
 import javax.swing.JScrollPane;
 import javax.swing.border.Border;
 
+@SuppressWarnings("serial")
 public class GAlignmentPanel extends JPanel
 {
-  protected JPanel sequenceHolderPanel = new JPanel();
-
   protected JScrollBar vscroll = new JScrollBar();
 
   protected JScrollBar hscroll = new JScrollBar();
 
-  protected JPanel seqPanelHolder = new JPanel();
-
   BorderLayout borderLayout1 = new BorderLayout();
 
   BorderLayout borderLayout3 = new BorderLayout();
 
-  protected JPanel scalePanelHolder = new JPanel();
-
-  protected JPanel idPanelHolder = new JPanel();
-
   BorderLayout borderLayout5 = new BorderLayout();
 
-  protected JPanel idSpaceFillerPanel1 = new JPanel();
-
-  public JPanel annotationSpaceFillerHolder = new JPanel();
-
   BorderLayout borderLayout6 = new BorderLayout();
 
   ButtonGroup buttonGroup1 = new ButtonGroup();
 
   BorderLayout borderLayout7 = new BorderLayout();
 
-  JPanel hscrollHolder = new JPanel();
-
   BorderLayout borderLayout10 = new BorderLayout();
 
-  protected JPanel hscrollFillerPanel = new JPanel();
-
   BorderLayout borderLayout11 = new BorderLayout();
 
   public JScrollPane annotationScroller = new JScrollPane();
@@ -75,6 +60,32 @@ public class GAlignmentPanel extends JPanel
 
   BorderLayout borderLayout4 = new BorderLayout();
 
+  static JPanel newJPanel()
+  { // BH 2019
+    JPanel p = new JPanel();
+    // leaving this in, as it prevents
+    // the checkerboard business, despite how
+    // funky that looks. Remove if you want to.
+    p.setBackground(Color.white);
+    return p;
+  }
+
+  protected JPanel sequenceHolderPanel = newJPanel();
+
+  protected JPanel seqPanelHolder = newJPanel();
+
+  protected JPanel scalePanelHolder = newJPanel();
+
+  public JPanel idPanelHolder = newJPanel();
+
+  protected JPanel idSpaceFillerPanel1 = newJPanel();
+
+  public JPanel annotationSpaceFillerHolder = newJPanel();
+
+  protected JPanel hscrollFillerPanel = newJPanel();
+
+  JPanel hscrollHolder = newJPanel();
+
   public GAlignmentPanel()
   {
     try
@@ -88,6 +99,8 @@ public class GAlignmentPanel extends JPanel
 
   private void jbInit() throws Exception
   {
+    // annotationScroller.setBackground(Color.white); // BH 2019
+
     border1 = BorderFactory.createLineBorder(Color.gray, 1);
     idPanelHolder.setBorder(null);
     idPanelHolder.setPreferredSize(new Dimension(70, 10));