X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignmentPanel.java;h=bbbb1ab53e4924b138fe452a255d9314301573a8;hb=09b64bea954c283bde1d21c0a230f51f1ae89373;hp=c361c1e02a840fc7b10dc7521b0147f5fc627552;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignmentPanel.java b/src/jalview/jbgui/GAlignmentPanel.java
index c361c1e..bbbb1ab 100755
--- a/src/jalview/jbgui/GAlignmentPanel.java
+++ b/src/jalview/jbgui/GAlignmentPanel.java
@@ -25,12 +25,20 @@ public class GAlignmentPanel extends JPanel
   protected JPanel scalePanelHolder = new JPanel();
   protected JPanel idPanelHolder = new JPanel();
   BorderLayout borderLayout5 = new BorderLayout();
-  JPanel jPanel3 = new JPanel();
+  protected JPanel idSpaceFillerPanel1 = new JPanel();
   protected JPanel idSpaceFillerPanel = new JPanel();
   BorderLayout borderLayout4 = new BorderLayout();
   BorderLayout borderLayout6 = new BorderLayout();
   ButtonGroup buttonGroup1 = new ButtonGroup();
   BorderLayout borderLayout7 = new BorderLayout();
+  JPanel jPanel3 = new JPanel();
+  protected JPanel secondaryPanelHolder = new JPanel();
+  BorderLayout borderLayout8 = new BorderLayout();
+  BorderLayout borderLayout9 = new BorderLayout();
+  JPanel jPanel1 = new JPanel();
+  BorderLayout borderLayout10 = new BorderLayout();
+  protected JPanel hscrollFillerPanel = new JPanel();
+  BorderLayout borderLayout11 = new BorderLayout();
 
   public GAlignmentPanel()
   {
@@ -64,22 +72,31 @@ public class GAlignmentPanel extends JPanel
     scorePanelHolder.setPreferredSize(new Dimension(10, 80));
     scorePanelHolder.setLayout(borderLayout4);
     idPanelHolder.setLayout(borderLayout5);
-    jPanel3.setBackground(Color.white);
-    jPanel3.setPreferredSize(new Dimension(10, 30));
+    idSpaceFillerPanel1.setBackground(Color.white);
+    idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
+    idSpaceFillerPanel1.setLayout(borderLayout11);
     idSpaceFillerPanel.setBackground(Color.white);
     idSpaceFillerPanel.setPreferredSize(new Dimension(10, 80));
     hscroll.setOrientation(JScrollBar.HORIZONTAL);
-    vscroll.setEnabled(true);
-    sequenceHolderPanel.add(scorePanelHolder, BorderLayout.SOUTH);
+    jPanel3.setLayout(borderLayout9);
+    secondaryPanelHolder.setLayout(borderLayout8);
+    jPanel1.setLayout(borderLayout10);
+    hscrollFillerPanel.setBackground(Color.white);
+    jPanel1.setBackground(Color.white);
     sequenceHolderPanel.add(scalePanelHolder,  BorderLayout.NORTH);
     sequenceHolderPanel.add(seqPanelHolder,  BorderLayout.CENTER);
+    seqPanelHolder.add(vscroll, BorderLayout.EAST);
     this.add(jPanel2, BorderLayout.CENTER);
     jPanel2.add(sequenceHolderPanel, BorderLayout.CENTER);
-    seqPanelHolder.add(vscroll, BorderLayout.EAST);
-    seqPanelHolder.add(hscroll, BorderLayout.SOUTH);
+    sequenceHolderPanel.add(jPanel3,  BorderLayout.SOUTH);
+    jPanel3.add(scorePanelHolder, BorderLayout.CENTER);
+  //  jPanel3.add(secondaryPanelHolder,  BorderLayout.SOUTH);
     this.add(idPanelHolder, BorderLayout.WEST);
-    idPanelHolder.add(jPanel3,  BorderLayout.NORTH);
+    idPanelHolder.add(idSpaceFillerPanel1,  BorderLayout.NORTH);
     idPanelHolder.add(idSpaceFillerPanel,  BorderLayout.SOUTH);
+    this.add(jPanel1,  BorderLayout.SOUTH);
+    jPanel1.add(hscroll, BorderLayout.CENTER);
+    jPanel1.add(hscrollFillerPanel,  BorderLayout.WEST);
   }