X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignmentPanel.java;h=efbc6af31bd1fa6103c805f68c450c221e412c00;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=a4121250c53074a8482600a915ac53decabe1410;hpb=56c4bbb0c67941f9adf823e450ccc3b4e02ea3eb;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignmentPanel.java b/src/jalview/jbgui/GAlignmentPanel.java
index a412125..efbc6af 100755
--- a/src/jalview/jbgui/GAlignmentPanel.java
+++ b/src/jalview/jbgui/GAlignmentPanel.java
@@ -1,108 +1,135 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
- */
-package jalview.jbgui;
-
-import java.awt.*;
-import javax.swing.*;
-import javax.swing.border.*;
-
-public class GAlignmentPanel
-    extends JPanel
-{
-  protected JPanel sequenceHolderPanel = new JPanel();
-  protected JScrollBar vscroll = new JScrollBar();
-  protected JScrollBar hscroll = new JScrollBar();
-  protected JPanel seqPanelHolder = new JPanel();
-  BorderLayout borderLayout1 = new BorderLayout();
-  BorderLayout borderLayout3 = new BorderLayout();
-  protected JPanel scalePanelHolder = new JPanel();
-  protected JPanel idPanelHolder = new JPanel();
-  BorderLayout borderLayout5 = new BorderLayout();
-  protected JPanel idSpaceFillerPanel1 = new JPanel();
-  public JPanel annotationSpaceFillerHolder = new JPanel();
-  BorderLayout borderLayout6 = new BorderLayout();
-  ButtonGroup buttonGroup1 = new ButtonGroup();
-  BorderLayout borderLayout7 = new BorderLayout();
-  JPanel hscrollHolder = new JPanel();
-  BorderLayout borderLayout10 = new BorderLayout();
-  protected JPanel hscrollFillerPanel = new JPanel();
-  BorderLayout borderLayout11 = new BorderLayout();
-  public JScrollPane annotationScroller = new JScrollPane();
-  Border border1;
-  BorderLayout borderLayout4 = new BorderLayout();
-
-  public GAlignmentPanel()
-  {
-    try
-    {
-      jbInit();
-    }
-    catch (Exception e)
-    {
-      e.printStackTrace();
-    }
-  }
-
-  private void jbInit()
-      throws Exception
-  {
-    border1 = BorderFactory.createLineBorder(Color.gray, 1);
-    idPanelHolder.setBorder(null);
-    idPanelHolder.setPreferredSize(new Dimension(70, 10));
-    this.setLayout(borderLayout7);
-    sequenceHolderPanel.setMaximumSize(new Dimension(2147483647, 2147483647));
-    sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));
-    sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));
-    sequenceHolderPanel.setLayout(borderLayout3);
-    seqPanelHolder.setLayout(borderLayout1);
-    scalePanelHolder.setBackground(Color.white);
-    scalePanelHolder.setMinimumSize(new Dimension(10, 80));
-    scalePanelHolder.setPreferredSize(new Dimension(10, 30));
-    scalePanelHolder.setLayout(borderLayout6);
-    idPanelHolder.setLayout(borderLayout5);
-    idSpaceFillerPanel1.setBackground(Color.white);
-    idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
-    idSpaceFillerPanel1.setLayout(borderLayout11);
-    annotationSpaceFillerHolder.setBackground(Color.white);
-    annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));
-    annotationSpaceFillerHolder.setLayout(borderLayout4);
-    hscroll.setOrientation(JScrollBar.HORIZONTAL);
-    hscrollHolder.setLayout(borderLayout10);
-    hscrollFillerPanel.setBackground(Color.white);
-    hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));
-    hscrollHolder.setBackground(Color.white);
-    annotationScroller.setBorder(null);
-    annotationScroller.setPreferredSize(new Dimension(10, 80));
-    this.setPreferredSize(new Dimension(220, 166));
-
-    sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);
-    sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);
-    seqPanelHolder.add(vscroll, BorderLayout.EAST);
-    sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);
-
-    //  jPanel3.add(secondaryPanelHolder,  BorderLayout.SOUTH);
-    this.add(idPanelHolder, BorderLayout.WEST);
-    idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);
-    idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);
-    this.add(hscrollHolder, BorderLayout.SOUTH);
-    hscrollHolder.add(hscroll, BorderLayout.CENTER);
-    hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);
-    this.add(sequenceHolderPanel, BorderLayout.CENTER);
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.jbgui;
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Dimension;
+
+import javax.swing.BorderFactory;
+import javax.swing.ButtonGroup;
+import javax.swing.JPanel;
+import javax.swing.JScrollBar;
+import javax.swing.JScrollPane;
+import javax.swing.border.Border;
+
+public class GAlignmentPanel extends JPanel
+{
+  protected JPanel sequenceHolderPanel = new JPanel();
+
+  protected JScrollBar vscroll = new JScrollBar();
+
+  protected JScrollBar hscroll = new JScrollBar();
+
+  protected JPanel seqPanelHolder = new JPanel();
+
+  BorderLayout borderLayout1 = new BorderLayout();
+
+  BorderLayout borderLayout3 = new BorderLayout();
+
+  protected JPanel scalePanelHolder = new JPanel();
+
+  protected JPanel idPanelHolder = new JPanel();
+
+  BorderLayout borderLayout5 = new BorderLayout();
+
+  protected JPanel idSpaceFillerPanel1 = new JPanel();
+
+  public JPanel annotationSpaceFillerHolder = new JPanel();
+
+  BorderLayout borderLayout6 = new BorderLayout();
+
+  ButtonGroup buttonGroup1 = new ButtonGroup();
+
+  BorderLayout borderLayout7 = new BorderLayout();
+
+  JPanel hscrollHolder = new JPanel();
+
+  BorderLayout borderLayout10 = new BorderLayout();
+
+  protected JPanel hscrollFillerPanel = new JPanel();
+
+  BorderLayout borderLayout11 = new BorderLayout();
+
+  public JScrollPane annotationScroller = new JScrollPane();
+
+  Border border1;
+
+  BorderLayout borderLayout4 = new BorderLayout();
+
+  public GAlignmentPanel()
+  {
+    try
+    {
+      jbInit();
+    } catch (Exception e)
+    {
+      e.printStackTrace();
+    }
+  }
+
+  private void jbInit() throws Exception
+  {
+    border1 = BorderFactory.createLineBorder(Color.gray, 1);
+    idPanelHolder.setBorder(null);
+    idPanelHolder.setPreferredSize(new Dimension(70, 10));
+    this.setLayout(borderLayout7);
+    sequenceHolderPanel
+            .setMaximumSize(new Dimension(2147483647, 2147483647));
+    sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));
+    sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));
+    sequenceHolderPanel.setLayout(borderLayout3);
+    seqPanelHolder.setLayout(borderLayout1);
+    scalePanelHolder.setBackground(Color.white);
+    scalePanelHolder.setMinimumSize(new Dimension(10, 80));
+    scalePanelHolder.setPreferredSize(new Dimension(10, 30));
+    scalePanelHolder.setLayout(borderLayout6);
+    idPanelHolder.setLayout(borderLayout5);
+    idSpaceFillerPanel1.setBackground(Color.white);
+    idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
+    idSpaceFillerPanel1.setLayout(borderLayout11);
+    annotationSpaceFillerHolder.setBackground(Color.white);
+    annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));
+    annotationSpaceFillerHolder.setLayout(borderLayout4);
+    hscroll.setOrientation(JScrollBar.HORIZONTAL);
+    hscrollHolder.setLayout(borderLayout10);
+    hscrollFillerPanel.setBackground(Color.white);
+    hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));
+    hscrollHolder.setBackground(Color.white);
+    annotationScroller.setBorder(null);
+    annotationScroller.setPreferredSize(new Dimension(10, 80));
+    this.setPreferredSize(new Dimension(220, 166));
+
+    sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);
+    sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);
+    seqPanelHolder.add(vscroll, BorderLayout.EAST);
+    sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);
+
+    // jPanel3.add(secondaryPanelHolder, BorderLayout.SOUTH);
+    this.add(idPanelHolder, BorderLayout.WEST);
+    idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);
+    idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);
+    this.add(hscrollHolder, BorderLayout.SOUTH);
+    hscrollHolder.add(hscroll, BorderLayout.CENTER);
+    hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);
+    this.add(sequenceHolderPanel, BorderLayout.CENTER);
+  }
+}