X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGDesktop.java;h=124c7c7457c081401d84552f5a0170928cfb2c8f;hb=c24ec44edbedba55005373c43bf712c047b56faa;hp=e0467836f8f1caabc00ee1083b84178bed131214;hpb=68c8a239acd5ff30ef4d8f00dfd9d15bf4923b6b;p=jalview.git

diff --git a/src/jalview/jbgui/GDesktop.java b/src/jalview/jbgui/GDesktop.java
index e046783..124c7c7 100755
--- a/src/jalview/jbgui/GDesktop.java
+++ b/src/jalview/jbgui/GDesktop.java
@@ -32,6 +32,8 @@ import javax.swing.JMenuItem;
 
 import jalview.api.AlignmentViewPanel;
 import jalview.bin.Cache;
+import jalview.gui.APQHandlers;
+import jalview.gui.Desktop;
 import jalview.io.FileFormatException;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
@@ -147,10 +149,10 @@ public class GDesktop extends JFrame
      */
     try
     {
-      APQHandlers.setAPQHandlers(this);
+      APQHandlers.setAPQHandlers((Desktop) this);
     } catch (Exception e)
     {
-      System.out.println("Cannot set APQHandlers");
+      jalview.bin.Console.outPrintln("Cannot set APQHandlers");
       // e.printStackTrace();
     } catch (Throwable t)
     {
@@ -191,7 +193,7 @@ public class GDesktop extends JFrame
           inputURLMenuItem_actionPerformed(null);
         } catch (FileFormatException e1)
         {
-          System.err.println("Error loading from URL: " + e1.getMessage());
+          jalview.bin.Console.errPrintln("Error loading from URL: " + e1.getMessage());
         }
       }
     });
@@ -212,7 +214,8 @@ public class GDesktop extends JFrame
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        quit();
+        if (Desktop.instance != null)
+          Desktop.instance.desktopQuit();
       }
     });
     aboutMenuItem.setText(MessageManager.getString("label.about"));
@@ -389,10 +392,6 @@ public class GDesktop extends JFrame
       }
     });
 
-    Float specversion = Platform.isJS() ? Float.valueOf(8)
-            : Float.parseFloat(
-                    System.getProperty("java.specification.version"));
-
     desktopMenubar.add(FileMenu);
     desktopMenubar.add(toolsMenu);
     desktopMenubar.add(HelpMenu);
@@ -522,7 +521,7 @@ public class GDesktop extends JFrame
    */
   protected void quit()
   {
-    // System.out.println("********** GDesktop.quit()");
+    // jalview.bin.Console.outPrintln("********** GDesktop.quit()");
   }
 
   /**